9HAT | pdb_00009hat

pT=3 virus-like particle of ssRNA phage Beihai26 coat protein

PDB DOI: https://doi.org/10.2210/pdb9HAT/pdb
EM Map EMD-52006: EMDB EMDataResource

Classification: VIRUS LIKE PARTICLE
Organism(s): Leviviridae sp.
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-11-05 Released: 2024-11-13
Deposition Author(s): Kalnins, G.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.60 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

pT=3 virus like particle of ssRNA phage Beihai26

Kalnins, G.

To be published.

Macromolecule Content

Total Structure Weight: 2,321.35 kDa
Atom Count: 163,260
Modeled Residue Count: 22,140
Deposited Residue Count: 22,140
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A [auth AA] AA [auth BJ] AB [auth CS] AC [auth EA] AD [auth FJ] A [auth AA], AA [auth BJ], AB [auth CS], AC [auth EA], AD [auth FJ], AE [auth GS], AF [auth IA], B [auth AC], BA [auth BK], BB [auth CT], BC [auth EC], BD [auth FK], BE [auth GT], BF [auth IC], C [auth AD], CA [auth BM], CB [auth CU], CC [auth ED], CD [auth FM], CE [auth GU], CF [auth ID], D [auth AE], DA [auth BN], DB [auth CW], DC [auth EE], DD [auth FN], DE [auth GW], DF [auth IE], E [auth AG], EA [auth BO], EB [auth CX], EC [auth EG], ED [auth FO], EE [auth GX], EF [auth IG], F [auth AH], FA [auth BQ], FB [auth CY], FC [auth EH], FD [auth FQ], FE [auth GY], FF [auth IH], G [auth AI], GA [auth BR], GB [auth DA], GC [auth EI], GD [auth FR], GE [auth HA], GF [auth II], H [auth AK], HA [auth BS], HB [auth DB], HC [auth EK], HD [auth FS], HE [auth HB], HF [auth IK], I [auth AL], IA [auth BU], IB [auth DC], IC [auth EL], ID [auth FU], IE [auth HC], IF [auth IL], J [auth AM], JA [auth BV], JB [auth DE], JC [auth EM], JD [auth FV], JE [auth HE], JF [auth IM], K [auth AO], KA [auth BW], KB [auth DF], KC [auth EO], KD [auth FW], KE [auth HF], KF [auth IO], L [auth AP], LA [auth BY], LB [auth DG], LC [auth EP], LD [auth FY], LE [auth HG], LF [auth IP], M [auth AQ], MA [auth BZ], MB [auth DI], MC [auth EQ], MD [auth FZ], ME [auth HI], MF [auth IQ], N [auth AS], NA [auth CA], NB [auth DJ], NC [auth ES], ND [auth GA], NE [auth HJ], NF [auth IS], O [auth AT], OA [auth CC], OB [auth DK], OC [auth ET], OD [auth GC], OE [auth HK], OF [auth IT], P [auth AU], PA [auth CD], PB [auth DM], PC [auth EU], PD [auth GD], PE [auth HM], PF [auth IU], Q [auth AW], QA [auth CE], QB [auth DN], QC [auth EW], QD [auth GE], QE [auth HN], QF [auth IW], R [auth AX], RA [auth CG], RB [auth DO], RC [auth EX], RD [auth GG], RE [auth HO], RF [auth IX], S [auth AY], SA [auth CH], SB [auth DQ], SC [auth EY], SD [auth GH], SE [auth HQ], SF [auth IY], T [auth BA], TA [auth CI], TB [auth DR], TC [auth FA], TD [auth GI], TE [auth HR], TF [auth JA], U [auth BB], UA [auth CK], UB [auth DS], UC [auth FB], UD [auth GK], UE [auth HS], UF [auth JB], V [auth BC], VA [auth CL], VB [auth DU], VC [auth FC], VD [auth GL], VE [auth HU], VF [auth JC], W [auth BE], WA [auth CM], WB [auth DV], WC [auth FE], WD [auth GM], WE [auth HV], WF [auth JE], X [auth BF], XA [auth CO], XB [auth DW], XC [auth FF], XD [auth GO], XE [auth HW], XF [auth JF], Y [auth BG], YA [auth CP], YB [auth DY], YC [auth FG], YD [auth GP], YE [auth HY], Z [auth BI], ZA [auth CQ], ZB [auth DZ], ZC [auth FI], ZD [auth GQ], ZE [auth HZ]	123	Leviviridae sp.	Mutation(s): 0
UniProt
Find proteins for A0A1L3KIJ1 (Beihai levi-like virus 26) Explore A0A1L3KIJ1 Go to UniProtKB: A0A1L3KIJ1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A1L3KIJ1
Sequence Annotations Expand
Reference Sequence