9H9A | pdb_00009h9a

native structure of the full-length pesticidal protein Cry8Ba2, from crystals formed in vivo (form 1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 
    0.224 (Depositor), 0.225 (DCC) 
  • R-Value Work: 
    0.180 (Depositor), 0.185 (DCC) 
  • R-Value Observed: 
    0.182 (Depositor) 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The long and short of it: Distinct natural crystal packing strategies of Cry toxins from Bacillus thuringiensis.

Best, H.L.Williamson, L.J.Cutts, A.B.Galchenkova, M.Yefanov, O.Bryce-Sharron, N.Heath, E.A.de Wijn, R.Schubert, R.Munke, A.Henkel, A.Klopprogge, B.Scheer, T.E.S.Kremling, V.Awel, S.Pena, G.Knoska, J.Keloth, A.Maracke, J.Letrun, R.Sobolev, E.Bielecki, J.Melo, D.Kantamneni, S.Doerner, K.Kloos, M.Schulz, J.Xavier, P.L.Lauffer, M.Villanueva, M.Caballero, P.Waller-Evans, H.Lloyd-Evans, E.Uetrecht, C.Bean, R.Chapman, H.N.Crickmore, N.Rizkallah, P.J.Berry, C.Oberthur, D.

(2026) Structure 

  • DOI: https://doi.org/10.1016/j.str.2026.01.014
  • Primary Citation of Related Structures:  
    9H99, 9H9A, 9H9B, 9QXQ

  • PubMed Abstract: 

    Bacillus thuringiensis (Bt) strains naturally produce pesticidal proteins as nanocrystalline inclusions that are extraordinarily stable in aqueous environments, but which dissolve selectively at specific pH conditions. These proteins have been used in agriculture for >50 years and are critical to global food security. The majority of previously determined Bt Cry protein structures lack the extended C-terminal "crystallization domain," which is thought to stabilize crystal packing and control selective solubility in insect targets, often via manipulation of disulfide bridges. It has also recently been shown to influence toxicity and target specificity. Here, we use serial femtosecond crystallography (SFX) to determine high-resolution full-length native structures of Cry1Ca18 (1.65 Å) and Cry8Ba2 (2.27 Å) in their natural nanocrystalline state. Differences in cysteine content (19 versus 4 residues) reveal distinct in vivo crystal-stabilization strategies. Understanding Bt toxin domain architecture and natural crystal formation is essential for improving biopesticide design and advancing agricultural genetic engineering.


  • Organizational Affiliation
    • School of Biosciences, Cardiff University, Cardiff CF10 3AX, UK; Medicines Discovery Institute, Cardiff University, Cardiff CF10 3AX, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cry8Ba21,169Bacillus thuringiensisMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free:  0.224 (Depositor), 0.225 (DCC) 
  • R-Value Work:  0.180 (Depositor), 0.185 (DCC) 
  • R-Value Observed: 0.182 (Depositor) 
Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.23α = 90
b = 92.23β = 90
c = 308.23γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
CrystFELdata reduction
CrystFELdata scaling

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S002774/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M009122/1

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-03
    Type: Initial release
  • Version 1.1: 2026-03-04
    Changes: Database references