9GYE | pdb_00009gye

Hemolytic Phospholipase C (PLC H)

PDB DOI: https://doi.org/10.2210/pdb9GYE/pdb
EM Map EMD-51693: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Pseudomonas aeruginosa PA14
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-10-01 Released: 2025-10-15
Deposition Author(s): Sabharwal, N.S., Labahn, J.L.
Funding Organization(s): Helmholtz Association

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 9GYE

This is version 1.0 of the entry. See complete history.

Literature

Structure of Hemolytic Phospholipase C (PLC H)

Sabharwal, N.S., Labahn, J.L.

To be published.

Macromolecule Content

Total Structure Weight: 84.5 kDa
Atom Count: 5,502
Modeled Residue Count: 686
Deposited Residue Count: 744
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
phospholipase C	A	744	Pseudomonas aeruginosa PA14	Mutation(s): 0 Gene Names: N8E94_21890 EC: 3.1.4.3
UniProt
Find proteins for P06200 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P06200 Go to UniProtKB: P06200
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P06200
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA (Subject of Investigation/LOI) Query on CA Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
TPO Query on TPO	A	L-PEPTIDE LINKING	C₄ H₁₀ N O₆ P		THR

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21_5207:

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2025-10-15

Deposition Author(s):

Sabharwal, N.S.

Funding Organization	Location	Grant Number
Helmholtz Association	Germany	--

Revision History (Full details and data files)

Version 1.0: 2025-10-15
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.