9GPJ | pdb_00009gpj

Structure of UP1 S4DS6D phosphomimetic mutant in complex with human telomeric repeat DNA

• PDB DOI: https://doi.org/10.2210/pdb9GPJ/pdb
• NAKB: 9GPJ

• Classification: RNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2024-09-08 Released: 2024-09-25 
• Deposition Author(s): Dunnett, L., Prischi, F.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.53 Å
• R-Value Free: 
  0.206 (Depositor), 0.206 (DCC) 
• R-Value Work: 
  0.184 (Depositor), 0.184 (DCC) 
• R-Value Observed: 
  0.185 (Depositor) 

Starting Model: experimental

Literature

Structure of UP1 S4DS6D phosphomimetic mutant in complex with human telomeric repeat DNA

Dunnett, L., Prischi, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: NMR relaxation study

Macromolecule Content 

• Total Structure Weight: 26.19 kDa 
• Atom Count: 1,982 
• Modeled Residue Count: 195 
• Deposited Residue Count: 210 
• Unique protein chains: 1
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	A	198	Homo sapiens	Mutation(s): 2  Gene Names: HNRNPA1, HNRPA1
UniProt & NIH Common Fund Data Resources
Find proteins for P09651 (Homo sapiens) Explore P09651  Go to UniProtKB:  P09651
PHAROS:  P09651 GTEx:  ENSG00000135486

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3')	B	12	Homo sapiens

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.53 Å
• R-Value Free:  0.206 (Depositor), 0.206 (DCC) 
• R-Value Work:  0.184 (Depositor), 0.184 (DCC) 
• R-Value Observed: 0.185 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.425	α = 90
b = 51.425	β = 90
c = 172.08	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2024-09-25 
Deposition Author(s): Dunnett, L., Prischi, F.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-09-25
  Type: Initial release