9GK2 | pdb_00009gk2

Surface-layer (S-layer) PS2 protein from Corynebacterium glutamicum


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure and polar assembly of the PS2 S-layer of Corynebacterium glutamicum.

Sogues, A.Sleutel, M.Petit, J.Megrian, D.Bayan, N.Wehenkel, A.M.Remaut, H.

(2025) Proc Natl Acad Sci U S A 122: e2426928122-e2426928122

  • DOI: https://doi.org/10.1073/pnas.2426928122
  • Primary Citation of Related Structures:  
    9GK2

  • PubMed Abstract: 

    The polar-growing Corynebacteriales have a complex cell envelope architecture characterized by the presence of a specialized outer membrane composed of mycolic acids. In some Corynebacteriales , this mycomembrane is further supported by a proteinaceous surface layer or "S-layer," whose function, structure, and mode of assembly remain largely enigmatic. Here, we isolated ex vivo PS2 S-layers from the industrially important Corynebacterium glutamicum and determined its atomic structure by 3D cryo-EM reconstruction. PS2 monomers consist of a six-helix bundle "core," a three-helix bundle "arm," and a C-terminal transmembrane (TM) helix. The PS2 core oligomerizes into hexameric units anchored in the mycomembrane by a channel-like coiled-coil of the TM helices. The PS2 arms mediate trimeric lattice contacts, crystallizing the hexameric units into an intricate semipermeable lattice. Using pulse-chase live cell imaging, we show that the PS2 lattice is incorporated at the poles, coincident with the actinobacterial elongasome. Finally, phylogenetic analysis shows a paraphyletic distribution and dispersed chromosomal location of PS2 in Corynebacteriales as a result of multiple recombination events and losses. These findings expand our understanding of S-layer biology and enable applications of membrane-supported self-assembling bioengineered materials.


  • Organizational Affiliation
    • Structural and Molecular Microbiology, Vlaams Instituut voor Biotechnology (VIB) Center for Structural Biology, Brussels 1050, Belgium.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PS2432Corynebacterium glutamicumMutation(s): 0 
Gene Names: csp2
UniProt
Find proteins for Q04985 (Corynebacterium glutamicum)
Explore Q04985 
Go to UniProtKB:  Q04985
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04985
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21_5207:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Molecular Biology Organization (EMBO)European UnionALTF-709-2021
H2020 Marie Curie Actions of the European CommissionEuropean UnionSLYDIV

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-02
    Type: Initial release
  • Version 1.1: 2026-03-04
    Changes: Data collection, Database references, Structure summary