9FU2 | pdb_00009fu2

Smooth Muscle Myosin II in complex with MT-228

  • Classification: MOTOR PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Spodoptera frugiperda
  • Mutation(s): No 

  • Deposited: 2024-06-26 Released: 2025-07-09 
  • Deposition Author(s): Kikuti, C.M., Houdusse, A.
  • Funding Organization(s): Agence Nationale de la Recherche (ANR), National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA), National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 
    0.250 (Depositor), 0.242 (DCC) 
  • R-Value Work: 
    0.229 (Depositor), 0.222 (DCC) 
  • R-Value Observed: 
    0.230 (Depositor) 

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 9FU2

Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history

Literature

Development of clinically viable non-muscle myosin II small molecule inhibitors.

Radnai, L.Young, E.J.Kikuti, C.Toth, K.Zhou, M.Hafenbreidel, M.Stremel, R.F.Lin, L.Pasetto, P.Jin, X.Patel, A.Conlon, M.Briggs, S.B.Heidsieck, L.Sweeney, H.L.Sellers, J.Krieger-Burke, T.Martin, W.H.Sisco, J.Young, S.Pearson, P.Rumbaugh, G.Araldi, G.L.Duddy, S.K.Cameron, M.D.Surman, M.Houdusse, A.Griffin, P.R.Kamenecka, T.M.Miller, C.A.

(2025) Cell 188: 4604-4621.e15

  • DOI: https://doi.org/10.1016/j.cell.2025.06.006
  • Primary Citation Related Structures: 
    9FU2

  • PubMed Abstract: 

    Non-muscle myosin II (NMII), a molecular motor that regulates critical processes such as cytokinesis and neuronal plasticity, has substantial therapeutic potential. However, translating this potential to in vivo use has been hampered by a lack of selective tools. The most prototypical non-selective inhibitor inactivates both NMII and cardiac muscle myosin II (CMII), a key regulator of heart function. Using rational drug design, we developed a series of NMII inhibitors that markedly improve tolerability by selectively targeting NMII over CMII, including MT-228 and clinical candidate MT-110. MT-228 and MT-110 have excellent properties, including high brain penetration and efficacy in preclinical models of methamphetamine use disorder (MUD), which has no current FDA-approved therapies. The structure of MT-228 bound to myosin II provides insight into its selectivity for NMII over CMII. The broad therapeutic windows of these NMII inhibitors provide valuable tools for the scientific community and a promising clinical candidate for the treatment of MUD.


  • Organizational Affiliation
    • Department of Molecular Medicine, The Scripps Research Institute and The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology, Jupiter, FL 33458, USA; Department of Neuroscience, The Scripps Research Institute and The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology, Jupiter, FL 33458, USA.

Macromolecule Content 

  • Total Structure Weight: 229.26 kDa 
  • Atom Count: 5,855 
  • Modeled Residue Count: 713 
  • Deposited Residue Count: 1,972 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Myosin-111,972Homo sapiensMutation(s): 0 
Gene Names: MYH11KIAA0866
UniProt & NIH Common Fund Data Resources
Find proteins for P35749 (Homo sapiens)
Explore P35749 
Go to UniProtKB:  P35749
PHAROS:  P35749
GTEx:  ENSG00000133392 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35749
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 7 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ADP

Query on ADP



Download:Ideal Coordinates CCD File
B [auth A]ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
A1IGE
(Subject of Investigation/LOI)

Query on A1IGE



Download:Ideal Coordinates CCD File
I [auth A](3~{a}~{S})-1-(2-methoxypyridin-4-yl)-6,7-dimethyl-3~{a}-oxidanyl-2,3-dihydropyrrolo[2,3-b]quinolin-4-one
C19 H19 N3 O3
DUDYNUXUMAKUPK-LJQANCHMSA-N
VO4

Query on VO4



Download:Ideal Coordinates CCD File
C [auth A]VANADATE ION
O4 V
LSGOVYNHVSXFFJ-UHFFFAOYSA-N
DMS

Query on DMS



Download:Ideal Coordinates CCD File
E [auth A],
K [auth A],
N [auth A]
DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
EDO

Query on EDO



Download:Ideal Coordinates CCD File
F [auth A]
G [auth A]
H [auth A]
J [auth A]
L [auth A]
F [auth A],
G [auth A],
H [auth A],
J [auth A],
L [auth A],
M [auth A]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
CL

Query on CL



Download:Ideal Coordinates CCD File
O [auth A]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
MG

Query on MG



Download:Ideal Coordinates CCD File
D [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MLY
Query on MLY
A
L-PEPTIDE LINKINGC8 H18 N2 O2LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free:  0.250 (Depositor), 0.242 (DCC) 
  • R-Value Work:  0.229 (Depositor), 0.222 (DCC) 
  • R-Value Observed: 0.230 (Depositor) 
Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.106α = 90
b = 83.106β = 90
c = 132.251γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-21-Ce11-0022-01
National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)United StatesR01DA049544
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesR33NS119714
National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)United StatesUH3NS096833

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-09
    Type: Initial release
  • Version 1.1: 2025-07-16
    Changes: Database references
  • Version 1.2: 2025-09-03
    Changes: Database references