9FP6 | pdb_00009fp6

Structure of the NbNRC2 hexameric resistosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

A disease resistance protein triggers oligomerization of its NLR helper into a hexameric resistosome to mediate innate immunity.

Madhuprakash, J.Toghani, A.Contreras, M.P.Posbeyikian, A.Richardson, J.Kourelis, J.Bozkurt, T.O.Webster, M.W.Kamoun, S.

(2024) Sci Adv 10: eadr2594-eadr2594

  • DOI: https://doi.org/10.1126/sciadv.adr2594
  • Primary Citation of Related Structures:  
    9FP6

  • PubMed Abstract: 

    NRCs are essential helper NLR (nucleotide-binding domain and leucine-rich repeat) proteins that execute immune responses triggered by sensor NLRs. The resting state of NbNRC2 was recently shown to be a homodimer, but the sensor-activated state remains unclear. Using cryo-EM, we determined the structure of sensor-activated NbNRC2, which forms a hexameric inflammasome-like resistosome. Mutagenesis of the oligomerization interface abolished immune signaling, confirming the functional significance of the NbNRC2 resistosome. Comparative structural analyses between the resting state homodimer and sensor-activated homohexamer revealed substantial rearrangements, providing insights into NLR activation mechanisms. Furthermore, structural comparisons between NbNRC2 hexamer and previously reported CC-NLR pentameric assemblies revealed features allowing an additional protomer integration. Using the NbNRC2 hexamer structure, we assessed the recently released AlphaFold 3 for predicting activated CC-NLR oligomers, revealing high-confidence modeling of NbNRC2 and other CC-NLR amino-terminal α1 helices, a region proven difficult to resolve structurally. Overall, our work sheds light on NLR activation mechanisms and expands understanding of NLR structural diversity.


  • Organizational Affiliation
    • The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NRC2a
A, B, C, D, E
A, B, C, D, E, F
886Nicotiana benthamianaMutation(s): 0 
UniProt
Find proteins for A0A0S3ANR1 (Nicotiana benthamiana)
Explore A0A0S3ANR1 
Go to UniProtKB:  A0A0S3ANR1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0S3ANR1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC4.5.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/X01102X/1
UK Research and Innovation (UKRI)United KingdomMR/X033481/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBBSRC BBS/E/J/000PR9795
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBBSRC BBS/E/J/000PR9796
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBBSRC BBS/E/J/000PR9798
European Research Council (ERC)European Union743165
Gatsby Charitable FoundationUnited KingdomGatsby Charitable Foundation

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release
  • Version 1.1: 2025-07-02
    Changes: Data collection, Structure summary
  • Version 1.2: 2025-07-16
    Changes: Data collection, Database references