9FN0 | pdb_00009fn0

Succinyl-CoA:(R)-benzylsuccinate CoA-transferase (BbsEF)

PDB DOI: https://doi.org/10.2210/pdb9FN0/pdb

Classification: TRANSFERASE
Organism(s): Aromatoleum aromaticum EbN1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-06-07 Released: 2025-12-17
Deposition Author(s): Ermler, U., Heider, J., Demmer, U.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.197 (Depositor), 0.200 (DCC)
R-Value Work:
0.175 (Depositor)
R-Value Observed:
0.176 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Structure of the succinyl-CoA:(R)-benzylsuccinate CoA-transferase

Schuehle, K., Demmer, U., Heider, J., Ermler, U.

To be published.

Macromolecule Content

Total Structure Weight: 181.95 kDa
Atom Count: 13,712
Modeled Residue Count: 1,627
Deposited Residue Count: 1,638
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Subunit of Benzylsuccinate CoA-transferase	A, C	410	Aromatoleum aromaticum EbN1	Mutation(s): 0 Gene Names: bbsE, c2A312
UniProt
Find proteins for Q5P687 (Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1)) Explore Q5P687 Go to UniProtKB: Q5P687
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5P687
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Subunit of Benzylsuccinate CoA-transferase	B, D	409	Aromatoleum aromaticum EbN1	Mutation(s): 0 Gene Names: bbsF, c2A311
UniProt
Find proteins for Q5P688 (Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1)) Explore Q5P688 Go to UniProtKB: Q5P688
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5P688
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA (Subject of Investigation/LOI) Query on COA Download:Ideal Coordinates CCD File SDF format, chain J [auth D] MOL2 format, chain J [auth D] mmCIF format, chain J [auth D]	J [auth D]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain J [auth D] Interactions & Density Focus chain J [auth D]
TRS Query on TRS Download:Ideal Coordinates CCD File SDF format, chain K [auth D] SDF format, chain F [auth B] MOL2 format, chain K [auth D] MOL2 format, chain F [auth B] mmCIF format, chain K [auth D] mmCIF format, chain F [auth B]	F [auth B], K [auth D]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain F [auth B] Focus chain K [auth D] Interactions & Density Focus chain F [auth B] Focus chain K [auth D]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain G [auth B] SDF format, chain L [auth D] SDF format, chain I [auth D] SDF format, chain H [auth C] SDF format, chain E [auth B] MOL2 format, chain G [auth B] MOL2 format, chain L [auth D] MOL2 format, chain I [auth D] MOL2 format, chain H [auth C] MOL2 format, chain E [auth B] mmCIF format, chain G [auth B] mmCIF format, chain L [auth D] mmCIF format, chain I [auth D] mmCIF format, chain H [auth C] mmCIF format, chain E [auth B]	E [auth B], G [auth B], H [auth C], I [auth D], L [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain E [auth B] Focus chain G [auth B] Focus chain H [auth C] Focus chain I [auth D] Focus chain L [auth D] Interactions & Density Focus chain E [auth B] Focus chain G [auth B] Focus chain H [auth C] Focus chain I [auth D] Focus chain L [auth D]