9F7B | pdb_00009f7b

Thioesterase domain (GbnD6 TE domain) from the gladiolin PKS

• PDB DOI: https://doi.org/10.2210/pdb9F7B/pdb

• Classification: HYDROLASE
• Organism(s): Burkholderia gladioli
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-05-03 Released: 2025-05-14 
• Deposition Author(s): Alkhalaf, L.M., Pang, F., Fage, C.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.222 (Depositor), 0.227 (DCC) 
• R-Value Work: 
  0.172 (Depositor), 0.182 (DCC) 

Starting Model: in silico

Literature

Thioesterase domain (GbnD6 TE domain) from the gladiolin PKS

Alkhalaf, L.M., Pang, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 38.76 kDa 
• Atom Count: 2,457 
• Modeled Residue Count: 295 
• Deposited Residue Count: 350 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-hydroxyacyl-[acyl-carrier-protein] dehydratase	A	350	Burkholderia gladioli	Mutation(s): 0  Gene Names: A8H28_02115
UniProt
Find proteins for A0AB38TX38 (Burkholderia gladioli) Explore A0AB38TX38  Go to UniProtKB:  A0AB38TX38

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.222 (Depositor), 0.227 (DCC) 
• R-Value Work:  0.172 (Depositor), 0.182 (DCC) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.745	α = 90
b = 60.009	β = 95.794
c = 63.472	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
DIALS	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-05-14 
Deposition Author(s): Alkhalaf, L.M., Pang, F., Fage, C.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2025-05-14
  Type: Initial release