9F7B | pdb_00009f7b

Thioesterase domain (GbnD6 TE domain) from the gladiolin PKS

PDB DOI: https://doi.org/10.2210/pdb9F7B/pdb

Classification: HYDROLASE
Organism(s): Burkholderia gladioli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-05-03 Released: 2025-05-14
Deposition Author(s): Alkhalaf, L.M., Pang, F., Fage, C.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.222 (Depositor), 0.227 (DCC)
R-Value Work:
0.172 (Depositor), 0.182 (DCC)

Starting Model: in silico
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This is version 1.0 of the entry. See complete history.

Literature

Thioesterase domain (GbnD6 TE domain) from the gladiolin PKS

Alkhalaf, L.M., Pang, F.

To be published.

Macromolecule Content

Total Structure Weight: 38.76 kDa
Atom Count: 2,457
Modeled Residue Count: 295
Deposited Residue Count: 350
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-hydroxyacyl-[acyl-carrier-protein] dehydratase	A	350	Burkholderia gladioli	Mutation(s): 0 Gene Names: A8H28_02115
UniProt
Find proteins for A0AB38TX38 (Burkholderia gladioli) Explore A0AB38TX38 Go to UniProtKB: A0AB38TX38
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0AB38TX38
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.222 (Depositor), 0.227 (DCC)
R-Value Work: 0.172 (Depositor), 0.182 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.745	α = 90
b = 60.009	β = 95.794
c = 63.472	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
DIALS	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-05-14

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2025-05-14
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.