9E4Z | pdb_00009e4z

GluA2-gamma2 complex bound glutamate and cyclothiazide


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Memantine inhibits calcium-permeable AMPA receptors.

Carrillo, E.Montano Romero, A.Gonzalez, C.U.Turcu, A.L.Vazquez, S.Twomey, E.C.Jayaraman, V.

(2025) Nat Commun 16: 5576-5576

  • DOI: https://doi.org/10.1038/s41467-025-60543-5
  • Primary Citation of Related Structures:  
    9E4Y, 9E4Z

  • PubMed Abstract: 

    Memantine is an US Food and Drug Administration (FDA) approved drug that is thought to selectively inhibit NMDA-subtype of ionotropic glutamate receptors (NMDARs). NMDARs enable calcium influx into neurons and are critical for normal brain function. However, increasing evidence shows that calcium influx in neurological diseases is augmented by calcium-permeable AMPA-subtype ionotropic glutamate receptors (AMPARs). Here, we demonstrate that these calcium-permeable AMPARs (CP-AMPARs) are inhibited by memantine. Electrophysiology unveils that memantine inhibition of CP-AMPARs is dependent on their calcium permeability and the presence of their neuronal auxiliary subunit transmembrane AMPAR regulatory proteins (TARPs). Through cryo-electron microscopy we elucidate that memantine blocks CP-AMPAR ion channels in a unique mechanism of action from NMDARs. Furthermore, we demonstrate that memantine inhibits a gain of function AMPAR mutation found in a patient with a neurodevelopmental disorder. Our findings unlock potential exploitation of this site to design more specific drugs targeting CP-AMPARs.


  • Organizational Affiliation
    • Center for Membrane Biology, Department of Biochemistry and Molecular Biology, University of Texas Health Science Center at Houston, Houston, TX, USA. elisa.carrilloflores@uth.tmc.edu.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Isoform Flip of Glutamate receptor 2
A, B, C, D
811Rattus norvegicusMutation(s): 0 
Gene Names: Gria2GluA2Glur2
UniProt
Find proteins for P19491 (Rattus norvegicus)
Explore P19491 
Go to UniProtKB:  P19491
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19491
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Voltage-dependent calcium channel gamma-2 subunit
E, F, G, H
208Mus musculusMutation(s): 0 
Gene Names: Cacng2Stg
UniProt & NIH Common Fund Data Resources
Find proteins for O88602 (Mus musculus)
Explore O88602 
Go to UniProtKB:  O88602
IMPC:  MGI:1316660
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO88602
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CYZ (Subject of Investigation/LOI)
Query on CYZ

Download Ideal Coordinates CCD File 
J [auth A],
K [auth A],
M [auth B],
N [auth B]
CYCLOTHIAZIDE
C14 H16 Cl N3 O4 S2
BOCUKUHCLICSIY-KSCJFIISSA-N
GLU
Query on GLU

Download Ideal Coordinates CCD File 
I [auth A],
L [auth B],
O [auth C],
P [auth D]
GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM154904
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM122528
Other privateUnited StatesKinship Foundation 22098168
Other privateUnited StatesDiana Helis Henry Medical Research Foundation 142548

Revision History  (Full details and data files)

  • Version 1.0: 2025-06-18
    Type: Initial release
  • Version 1.1: 2025-07-16
    Changes: Data collection, Database references