9DSM | pdb_00009dsm

Cryo-EM structure of SSNA-1(R18E/R20E/Q98E) filaments


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.55 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structural insights into SSNA1 self-assembly and its microtubule binding for centriole maintenance.

Agostini, L.Pfister, J.A.Basnet, N.Ding, J.Zhang, R.Biertumpfel, C.O'Connell, K.F.Mizuno, N.

(2025) Nat Commun 16: 7512-7512

  • DOI: https://doi.org/10.1038/s41467-025-62696-9
  • Primary Citation of Related Structures:  
    9DSM

  • PubMed Abstract: 

    SSNA1 is a fibrillar protein involved in dynamic microtubule remodeling, including nucleation, co-polymerization, and microtubule branching. The underlying molecular mechanism has remained unclear due to a lack of structural information. Here, we determine the cryo-EM structure of C.elegans SSNA-1 at 4.55-Å resolution and evaluate its role in embryonic development. We find that SSNA-1 forms an anti-parallel coiled-coil, with self-assembly facilitated by an overhang of 16 C-terminal residues that form a triple-stranded helical junction. The microtubule-binding region is within the triple-stranded junction, suggesting that self-assembly of SSNA-1 creates hubs for effective microtubule interaction. Genetical analysis elucidates that SSNA-1 deletion significantly reduces embryonic viability, and causes multipolar spindles during cell division. Interestingly, impairing SSNA-1 self-assembly has a comparable effect on embryonic viability as the knockout strain. Our study provides molecular insights into SSNA-1's self-assembly and its role in microtubule binding and cell division regulation through centriole stability.


  • Organizational Affiliation
    • Laboratory of Structural Cell Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, 50 South Dr., Bethesda, MD, 20892, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sjogren's Syndrome Nuclear Autoantigen124Caenorhabditis elegansMutation(s): 3 
Gene Names: ssna-1tag-261CELE_T07A9.13T07A9.13
UniProt
Find proteins for Q5F4U5 (Caenorhabditis elegans)
Explore Q5F4U5 
Go to UniProtKB:  Q5F4U5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5F4U5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.55 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21_5207+SVN
RECONSTRUCTIONcryoSPARC4.5.3

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-27
    Type: Initial release