9CRW | pdb_00009crw

Crystal structure of the Candida albicans kinesin-8 proximal tail domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 
    0.278 (Depositor), 0.278 (DCC) 
  • R-Value Work: 
    0.234 (Depositor), 0.234 (DCC) 
  • R-Value Observed: 
    0.235 (Depositor) 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Fungal kinesin-8 motors dimerize by folding their proximal tail domain into a compact helical bundle.

Trofimova, D.Doubleday, C.Hunter, B.Serrano Arevalo, J.D.Davison, E.Wen, E.Munro, K.Allingham, J.S.

(2025) Structure 33: 2122

  • DOI: https://doi.org/10.1016/j.str.2025.08.011
  • Primary Citation of Related Structures:  
    9CRW

  • PubMed Abstract: 

    Kinesin-8 motors regulate kinetochore-microtubule dynamics and control spindle length and positioning. Certain isoforms achieve this by traversing microtubules, accumulating at plus-ends, and depolymerizing terminal αβ-tubulin subunits. While the kinesin-8 motor domain is well characterized, the tail domain regions are less understood. Using the Candida albicans Kip3 protein as a model for fungal kinesin-8, we present an X-ray crystal structure and hydrodynamic analysis of its motor-proximal tail segment, revealing its role in motor dimerization. This segment forms a compact, 92 Å-long four-helix bundle, rather than an elongated coiled-coil stalk seen in most kinesins. The bundle is stabilized primarily by interactions between helices one and three, with additional support from helices two and four. A flexible hinge bisects the bundle into two lobules, imparting mechanical pliability and asymmetric exterior surfaces. These unique features may facilitate interactions with regulatory elements or contribute to the functional versatility of kinesin-8 motors.


  • Organizational Affiliation
    • Department of Biomedical and Molecular Sciences, Queen's University, Kingston, ON K7L 3N6, Canada.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Kinesin-like protein232Candida albicansMutation(s): 0 
Gene Names: KIP3CAALFM_C305720CAorf19.7353
UniProt
Find proteins for A0A1D8PKA4 (Candida albicans (strain SC5314 / ATCC MYA-2876))
Explore A0A1D8PKA4 
Go to UniProtKB:  A0A1D8PKA4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1D8PKA4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free:  0.278 (Depositor), 0.278 (DCC) 
  • R-Value Work:  0.234 (Depositor), 0.234 (DCC) 
  • R-Value Observed: 0.235 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.96α = 90
b = 104.57β = 93.37
c = 118.78γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
XDSdata reduction
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaPJT-169149
Natural Sciences and Engineering Research Council (NSERC, Canada)CanadaRGPIN-2019-05924

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-04
    Type: Initial release
  • Version 1.1: 2025-09-17
    Changes: Database references, Structure summary
  • Version 1.2: 2025-12-17
    Changes: Database references