9CP1 | pdb_00009cp1

Deposited: 2024-07-17 Released: 2025-07-23
Deposition Author(s): Gentry, J.K., Findlay, J.L., Lawrence, C.M.
Funding Organization(s): National Science Foundation (NSF, United States), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR-associated aCascade subunit Cas7/Csa2 2	A [auth F] B C D [auth E] E [auth D] A [auth F], B, C, D [auth E], E [auth D], F [auth A]	321	Saccharolobus solfataricus P2	Mutation(s): 0 Gene Names: csa2b, cas7b, SSO1442
UniProt
Find proteins for Q97Y91 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)) Explore Q97Y91 Go to UniProtKB: Q97Y91
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q97Y91
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
CRISPR system aCascade subunit Cas5 1	G	240	Saccharolobus solfataricus P2	Mutation(s): 0 Gene Names: cas5a, SSO1441
UniProt
Find proteins for Q97Y92 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)) Explore Q97Y92 Go to UniProtKB: Q97Y92
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q97Y92
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff)

Molecule	Chains	Length	Organism
Entity ID: 3
RNA (38-MER)	H [auth S]	63	Saccharolobus solfataricus
Sequence Annotations Expand
Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 4
DNA (5'-D(PCPGPGPGPTPTPTPTPCPCP*T)-3')	I [auth M]	11	Saccharolobus solfataricus
Sequence Annotations Expand
Reference Sequence

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRS Query on TRS Download:Ideal Coordinates CCD File SDF format, chain O [auth A] SDF format, chain N [auth D] SDF format, chain M [auth E] SDF format, chain L [auth C] SDF format, chain K [auth B] SDF format, chain J [auth F] MOL2 format, chain O [auth A] MOL2 format, chain N [auth D] MOL2 format, chain M [auth E] MOL2 format, chain L [auth C] MOL2 format, chain K [auth B] MOL2 format, chain J [auth F] mmCIF format, chain O [auth A] mmCIF format, chain N [auth D] mmCIF format, chain M [auth E] mmCIF format, chain L [auth C] mmCIF format, chain K [auth B] mmCIF format, chain J [auth F]	J [auth F] K [auth B] L [auth C] M [auth E] N [auth D] J [auth F], K [auth B], L [auth C], M [auth E], N [auth D], O [auth A]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain J [auth F] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth E] Focus chain N [auth D] Focus chain O [auth A] Interactions & Density Focus chain J [auth F] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth E] Focus chain N [auth D] Focus chain O [auth A]

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC
MODEL REFINEMENT	PHENIX

& Funding Information

Deposition Author(s):

Gentry, J.K.

Funding Organization	Location	Grant Number
National Science Foundation (NSF, United States)	United States	DBI-1828765
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	P30GM140963