9C8S | pdb_00009c8s

CryoEM structure of Cryptococcus neoformans H99 Acetyl-CoA Synthetase in complex with adenosine-5'-ethylphosphate

• PDB DOI: https://doi.org/10.2210/pdb9C8S/pdb
• EM Map EMD-45309: EMDB EMDataResource

• Classification: LIGASE
• Organism(s): Cryptococcus neoformans H99
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2024-06-12 Released: 2024-07-03 
• Deposition Author(s): Xu, Z., Schnicker, N.J., Jezeski, A.J., Krysan, D.J.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.37 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

CryoEM structure of Cryptococcus neoformans H99 Acetyl-CoA Synthetase in complex with adenosine-5'-ethylphosphate

Xu, Z., Schnicker, N.J., Jezeski, A.J., Krysan, D.J.

Not Published 

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 233.55 kDa 
• Atom Count: 12,340 
• Modeled Residue Count: 1,543 
• Deposited Residue Count: 2,082 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyl-coenzyme A synthetase	A, B, C	694	Cryptococcus neoformans H99	Mutation(s): 0  Gene Names: CNAG_00797 EC: 6.2.1.1
UniProt
Find proteins for J9VFT1 (Cryptococcus neoformans (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)) Explore J9VFT1  Go to UniProtKB:  J9VFT1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
WTA (Subject of Investigation/LOI)	D [auth A], E [auth B], F [auth C]	5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine C12 H18 N5 O7 P MXYRBUKSSSUFQO-WOUKDFQISA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.37 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-07-03 
Deposition Author(s): Xu, Z., Schnicker, N.J., Jezeski, A.J., Krysan, D.J.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	5R01AI161973

Revision History  

• Version 1.0: 2024-07-03
  Type: Initial release
  
• Version 1.1: 2025-01-15
  Changes: Data collection, Database references, Structure summary