9C8D | pdb_00009c8d

mouse Seipin/Adig complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.98 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Adipogenin promotes the development of lipid droplets by binding a dodecameric seipin complex.

Li, C.Sun, X.N.Funcke, J.B.Vanharanta, L.Prasanna, X.Gov, K.Li, Y.Virostek, M.Joung, C.Joffin, N.Kanerva, K.Szkalisity, A.Kulig, W.Straub, L.Chen, S.Velasco, J.Cobb, A.La Padula, D.Wang, M.Y.Onodera, T.Voros, C.Kim, D.S.Kim, M.Varlamov, O.Li, Y.Liu, C.Nawrocki, A.R.Zhao, S.Oh, D.Y.Wang, Z.V.Gordillo, R.Goodman, J.M.Wynn, R.M.Henne, W.M.Vattulainen, I.Han, Y.Ikonen, E.Scherer, P.E.

(2025) Science 390: eadr9755-eadr9755

  • DOI: https://doi.org/10.1126/science.adr9755
  • Primary Citation of Related Structures:  
    9C8D, 9C8E

  • PubMed Abstract: 

    The microprotein adipogenin (Adig) is predominantly expressed in adipose tissues. Here, we found that Adig interacts with seipin to form a stable, rigid complex. We present the structure of the seipin-Adig complex at an overall resolution of ~3.0 angstroms. The structure revealed that mammalian seipin assembles into two distinct oligomeric forms: undecamers and dodecamers. Adig selectively bound to the dodecameric form and enhanced seipin assembly by bridging and stabilizing adjacent subunits. Functionally, this complex promoted lipid droplet development at both early and late stages. In transgenic mice, adipocyte-specific overexpression of Adig increased fat mass and enlarged lipid droplets, whereas Adig deletion disrupted triglyceride accumulation in brown adipose tissues. Thus, Adig can modulate lipid storage through its structural and functional interactions with seipin.


  • Organizational Affiliation
    • Touchstone Diabetes Center, University of Texas Southwestern Medical Center, Dallas, TX, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Seipin
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
454Mus musculusMutation(s): 0 
Gene Names: Bscl2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Z2E9 (Mus musculus)
Explore Q9Z2E9 
Go to UniProtKB:  Q9Z2E9
IMPC:  MGI:1298392
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Z2E9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Adipogenin
M, N, O, P, Q
M, N, O, P, Q, R, S, T, U, V, W, X
94Mus musculusMutation(s): 0 
Gene Names: AdigSmaf1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8R400 (Mus musculus)
Explore Q8R400 
Go to UniProtKB:  Q8R400
IMPC:  MGI:2675492
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8R400
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.98 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesRC2-DK118620
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01- DK55758
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01-DK099110
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01-DK127274
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesR01-DK131537

Revision History  (Full details and data files)

  • Version 1.0: 2025-08-27
    Type: Initial release
  • Version 1.1: 2025-11-05
    Changes: Data collection, Database references
  • Version 1.2: 2025-11-19
    Changes: Data collection, Database references