9BYF | pdb_00009byf

Fab 212-55 in complex with OspA

PDB DOI: https://doi.org/10.2210/pdb9BYF/pdb

Classification: IMMUNE SYSTEM/ANTIGEN
Organism(s): Homo sapiens, Borreliella burgdorferi B31
Expression System: Cricetulus griseus, Escherichia coli B
Mutation(s): No

Deposited: 2024-05-23 Released: 2025-08-27
Deposition Author(s): Rudolph, M.J., Mantis, N.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free:
0.288 (Depositor), 0.287 (DCC)
R-Value Work:
0.230 (Depositor), 0.230 (DCC)
R-Value Observed:
0.233 (Depositor)

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Fab 212-55 in complex with OspA

Rudolph, M.J., Mantis, N.

To be published.

Macromolecule Content

Total Structure Weight: 75.92 kDa
Atom Count: 4,822
Modeled Residue Count: 615
Deposited Residue Count: 700
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
221-55 Fab Heavy Chain	A [auth H]	229	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
221-55 Fab Light Chain	B [auth L]	215	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer surface protein A	C [auth A]	256	Borreliella burgdorferi B31	Mutation(s): 0 Gene Names: ospA, BB_A15
UniProt
Find proteins for P0CL66 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore P0CL66 Go to UniProtKB: P0CL66
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0CL66
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain D [auth H] MOL2 format, chain D [auth H] mmCIF format, chain D [auth H]	D [auth H]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain D [auth H] Interactions & Density Focus chain D [auth H]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain L [auth A] SDF format, chain K [auth L] SDF format, chain J [auth L] SDF format, chain I [auth L] SDF format, chain H [auth L] SDF format, chain G [auth H] SDF format, chain F [auth H] SDF format, chain E [auth H] MOL2 format, chain L [auth A] MOL2 format, chain K [auth L] MOL2 format, chain J [auth L] MOL2 format, chain I [auth L] MOL2 format, chain H [auth L] MOL2 format, chain G [auth H] MOL2 format, chain F [auth H] MOL2 format, chain E [auth H] mmCIF format, chain L [auth A] mmCIF format, chain K [auth L] mmCIF format, chain J [auth L] mmCIF format, chain I [auth L] mmCIF format, chain H [auth L] mmCIF format, chain G [auth H] mmCIF format, chain F [auth H] mmCIF format, chain E [auth H]	E [auth H] F [auth H] G [auth H] H [auth L] I [auth L] E [auth H], F [auth H], G [auth H], H [auth L], I [auth L], J [auth L], K [auth L], L [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain E [auth H] Focus chain F [auth H] Focus chain G [auth H] Focus chain H [auth L] Focus chain I [auth L] Focus chain J [auth L] Focus chain K [auth L] Focus chain L [auth A] Interactions & Density Focus chain E [auth H] Focus chain F [auth H] Focus chain G [auth H] Focus chain H [auth L] Focus chain I [auth L] Focus chain J [auth L] Focus chain K [auth L] Focus chain L [auth A]