9BEE | pdb_00009bee

alphaB-crystallin N-terminal IXI variant in a fibril state

  • Classification: CHAPERONE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2024-04-15 Released: 2024-12-11 
  • Deposition Author(s): McFarland, R., Reichow, S.L.
  • Funding Organization(s): National Institutes of Health/National Eye Institute (NIH/NEI), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Dynamic fibrillar assembly of alpha B-crystallin induced by perturbation of the conserved NT-IXI motif resolved by cryo-EM.

McFarland, R.Noroozi, R.Miller, A.P.Reichow, S.L.

(2024) Nat Commun 15: 10336-10336

  • DOI: https://doi.org/10.1038/s41467-024-54647-7
  • Primary Citation of Related Structures:  
    9BEE

  • PubMed Abstract: 

    αB-crystallin is an archetypical member of the small heat shock proteins (sHSPs) vital for cellular proteostasis and mitigating protein misfolding diseases. Gaining insights into the principles defining their molecular organization and chaperone function have been hindered by intrinsic dynamic properties and limited high-resolution structural analysis. To disentangle the mechanistic underpinnings of these dynamical properties, we ablate a conserved IXI-motif located within the N-terminal (NT) domain of human αB-crystallin implicated in subunit exchange dynamics and client sequestration. This results in a profound structural transformation, from highly polydispersed caged-like native assemblies into an elongated fibril state amenable to high-resolution cryo-EM analysis. The reversible nature of this variant facilitates interrogation of functional effects due to perturbation of the NT-IXI motif in both the native-like oligomer and fibril states. Together, our investigations unveil several features thought to be key mechanistic attributes to sHSPs and point to a critical significance of the NT-IXI motif in αB-crystallin assembly, polydispersity, and chaperone activity.


  • Organizational Affiliation
    • Department of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-crystallin B chainA [auth B]88Homo sapiensMutation(s): 0 
Gene Names: CRYABCRYA2HSPB5
UniProt & NIH Common Fund Data Resources
Find proteins for P02511 (Homo sapiens)
Explore P02511 
Go to UniProtKB:  P02511
PHAROS:  P02511
GTEx:  ENSG00000109846 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02511
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-crystallin B chainB [auth A]108Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P02511 (Homo sapiens)
Explore P02511 
Go to UniProtKB:  P02511
PHAROS:  P02511
GTEx:  ENSG00000109846 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP02511
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
MODEL REFINEMENTCoot
MODEL REFINEMENTISOLDE

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesR01EY030987
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM124779
National Institutes of Health/National Eye Institute (NIH/NEI)United StatesF31EY033230
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU24GM129547

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-11
    Type: Initial release