9A8L | pdb_00009a8l

Modeling of Mouse NPC basket

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.

• PDB DOI: https://doi.org/10.2210/pdb9A8L/pdbIHM Entry Collection: PDBDEV_G_1000004

• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 2024-07-02 Released: 2024-08-21 
• Deposition Author(s): Singh, D., Soni, N., Hutchings, J., Echeverria, I., Shaikh, F., Duquette, M., Suslov, S., Li, Z., van Eeuwen, T., Molloy, K., Shi, Y., Wang, J., Guo, Q., Chait, B.T., Fernandez-Martinez, J., Rout, M.P., Sali, A., Villa, E.

---

Integrative Structure Snapshot

• Multi-Scale: Yes 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 1 
• Representative Model: 1 

Literature

The molecular architecture of the nuclear basket

Singh, D., Soni, N., Hutchings, J., Echeverria, I., Shaikh, F., Duquette, M., Suslov, S., Li, Z., van Eeuwen, T., Molloy, K., Shi, Y., Wang, J., Guo, Q., Chait, B.T., Fernandez-Martinez, J., Rout, M.P., Sali, A., Villa, E.

(2024) Cell 

• DOI: https://doi.org/10.1016/j.cell.2024.07.020

Assembly  

Macromolecule Content 

• Total Structure Weight: 24,115.23 kDa 
• Modeled Residue Count: 187,232 
• Deposited Residue Count: 187,232 
• Unique protein chains: 12

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoprotein TPR	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	2,431	Mus musculus	Mutation(s): 0  Gene Names: Tpr
UniProt & NIH Common Fund Data Resources
Find proteins for F6ZDS4 (Mus musculus) Explore F6ZDS4  Go to UniProtKB:  F6ZDS4
IMPC:  MGI:1922066

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear pore complex protein Nup50	AA, AB, AC, AD, AE, AF, Q, R, S, T, U, V, W, X, Y, Z	466	Mus musculus	Mutation(s): 0  Gene Names: Nup50
UniProt
Find proteins for Q9JIH2 (Mus musculus) Explore Q9JIH2  Go to UniProtKB:  Q9JIH2

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoporin 153	AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV	1,462	Mus musculus	Mutation(s): 0  Gene Names: Nup153
UniProt & NIH Common Fund Data Resources
Find proteins for E9Q3G8 (Mus musculus) Explore E9Q3G8  Go to UniProtKB:  E9Q3G8
IMPC:  MGI:2385621

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear pore complex protein Nup160	AW, AX, AY, AZ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL	1,402	Mus musculus	Mutation(s): 0  Gene Names: Nup160
UniProt
Find proteins for Q9Z0W3 (Mus musculus) Explore Q9Z0W3  Go to UniProtKB:  Q9Z0W3

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear pore complex protein Nup85	BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, CA, CB	656	Mus musculus	Mutation(s): 0  Gene Names: Nup85
UniProt & NIH Common Fund Data Resources
Find proteins for Q8R480 (Mus musculus) Explore Q8R480  Go to UniProtKB:  Q8R480
IMPC:  MGI:3046173

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear pore complex protein Nup98-Nup96	CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR	1,816	Mus musculus	Mutation(s): 0  Gene Names: Nup98 EC: 3.4.21
UniProt & NIH Common Fund Data Resources
Find proteins for Q6PFD9 (Mus musculus) Explore Q6PFD9  Go to UniProtKB:  Q6PFD9
IMPC:  MGI:109404

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein SEC13 homolog	CS, CT, CU, CV, CW, CX, CY, CZ, DA, DB, DC, DD, DE, DF, DG, DH	322	Mus musculus	Mutation(s): 0  Gene Names: Sec13
UniProt & NIH Common Fund Data Resources
Find proteins for Q9D1M0 (Mus musculus) Explore Q9D1M0  Go to UniProtKB:  Q9D1M0
IMPC:  MGI:99832

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoporin SEH1	DI, DJ, DK, DL, DM, DN, DO, DP, DQ, DR, DS, DT, DU, DV, DW, DX	360	Mus musculus	Mutation(s): 0  Gene Names: Seh1l
UniProt & NIH Common Fund Data Resources
Find proteins for Q8R2U0 (Mus musculus) Explore Q8R2U0  Go to UniProtKB:  Q8R2U0
IMPC:  MGI:1919374

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear pore complex protein Nup107	DY, DZ, EA, EB, EC, ED, EE, EF, EG, EH, EI, EJ, EK, EL, EM, EN	926	Mus musculus	Mutation(s): 0  Gene Names: Nup107
UniProt
Find proteins for Q8BH74 (Mus musculus) Explore Q8BH74  Go to UniProtKB:  Q8BH74

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Nuclear pore complex protein Nup133	EO, EP, EQ, ER, ES, ET, EU, EV, EW, EX, EY, EZ, FA, FB, FC, FD	1,155	Mus musculus	Mutation(s): 0  Gene Names: Nup133
UniProt & NIH Common Fund Data Resources
Find proteins for Q8R0G9 (Mus musculus) Explore Q8R0G9  Go to UniProtKB:  Q8R0G9
IMPC:  MGI:2442620

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoporin Nup37	FE, FF, FG, FH, FI, FJ, FK, FL, FM, FN, FO, FP, FQ, FR, FS, FT	326	Mus musculus	Mutation(s): 0  Gene Names: Nup37
UniProt & NIH Common Fund Data Resources
Find proteins for Q9CWU9 (Mus musculus) Explore Q9CWU9  Go to UniProtKB:  Q9CWU9
IMPC:  MGI:1919964

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoporin Nup43	FU, FV, FW, FX, FY, FZ, GA, GB, GC, GD, GE, GF, GG, GH, GI, GJ	380	Mus musculus	Mutation(s): 0  Gene Names: Nup43
UniProt
Find proteins for P59235 (Mus musculus) Explore P59235  Go to UniProtKB:  P59235

Experimental Data & Validation

Integrative Structure Snapshot

• Multi-Scale: Yes 
• Multi-State: No 
• Ordered-State: No 
• Deposited Models: 1 
• Representative Model: 1 

Structure Validation

View Full Validation Report

View Summary Validation Report

Entry History 

Deposition Data

• Released Date: 2024-08-21 
Deposition Author(s): Singh, D., Soni, N., Hutchings, J., Echeverria, I., Shaikh, F., Duquette, M., Suslov, S., Li, Z., van Eeuwen, T., Molloy, K., Shi, Y., Wang, J., Guo, Q., Chait, B.T., Fernandez-Martinez, J., Rout, M.P., Sali, A., Villa, E.

Revision History  

• Version 1.0: 2024-08-21
  Type: Initial release