9A3F | pdb_00009a3f

Modeling of the GLP-1 receptor-Gs complex

Integrative structure models are generated using different types of input information, including varied experimental data, physical principles, statistical preferences, and other prior information.


Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 7 
  • Representative Model: 1 

This is version 1.0 of the entry. See complete history


Literature

Conformational Dynamics of the Activated GLP-1 Receptor-Gs Complex Revealed by Cross-Linking Mass Spectrometry and Integrative Structure Modeling

Yuan, S.Xia, L.Wang, C.Wu, F.Zhang, B.Pan, C.Fan, Z.Lei, X.Stevens, R.Sali, A.Sun, L.Shui, W.

(2023) Acs Cent Sci 9: 992-1007

  • DOI: https://doi.org/10.1021/acscentsci.3c00063
  • Primary Citation of Related Structures:  
    9A3F

  • PubMed Abstract: 

    Despite advances in characterizing the structures and functions of G protein-coupled receptors (GPCRs), our understanding of GPCR activation and signaling is still limited by the lack of information on conformational dynamics. It is particularly challenging to study the dynamics of GPCR complexes with their signaling partners because of their transient nature and low stability. Here, by combining cross-linking mass spectrometry (CLMS) with integrative structure modeling, we map the conformational ensemble of an activated GPCR-G protein complex at near-atomic resolution. The integrative structures describe heterogeneous conformations for a high number of potential alternative active states of the GLP-1 receptor-G s complex. These structures show marked differences from the previously determined cryo-EM structure, especially at the receptor-G s interface and in the interior of the G s heterotrimer. Alanine-scanning mutagenesis coupled with pharmacological assays validates the functional significance of 24 interface residue contacts only observed in the integrative structures, yet absent in the cryo-EM structure. Through the integration of spatial connectivity data from CLMS with structure modeling, our study provides a new approach that is generalizable to characterizing the conformational dynamics of GPCR signaling complexes.


  • Organizational Affiliation
    • iHuman Institute, ShanghaiTech University, Shanghai 201210, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
GLP1R440Homo sapiensMutation(s): 0 
Gene Names: GLP1R
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PHAROS:  P43220
GTEx:  ENSG00000112164 
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UniProt GroupP43220
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
GLP131Homo sapiensMutation(s): 0 
Gene Names: GCG
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PHAROS:  P01275
GTEx:  ENSG00000115263 
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UniProt GroupP01275
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
GA394Homo sapiensMutation(s): 0 
Gene Names: GNAS
EC: 3.6.5
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GTEx:  ENSG00000087460 
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UniProt GroupP63092
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
GB340Homo sapiensMutation(s): 0 
Gene Names: GNB1
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GTEx:  ENSG00000078369 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
GG71Homo sapiensMutation(s): 0 
Gene Names: GNG2
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
NB129N/AMutation(s): 0 
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Experimental Data & Validation

Integrative Structure Snapshot

  • Multi-Scale: No 
  • Multi-State: No 
  • Ordered-State: No 
  • Deposited Models: 7 
  • Representative Model: 1 

Structure Validation

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View Summary Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-05
    Type: Initial release