8ZJ6 | pdb_00008zj6

Acinetobacter baumannii ModA with molybdate DTT

PDB DOI: https://doi.org/10.2210/pdb8ZJ6/pdb

Classification: METAL TRANSPORT
Organism(s): Acinetobacter baumannii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-05-14 Released: 2024-12-11
Deposition Author(s): Wen, Y., Jiao, M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.39 Å
R-Value Free:
0.194 (Depositor), 0.194 (DCC)
R-Value Work:
0.162 (Depositor), 0.162 (DCC)
R-Value Observed:
0.163 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Acinetobacter baumannii ModA

Wen, Y., Jiao, M.

(null) Sci Adv

Macromolecule Content

Total Structure Weight: 26.82 kDa
Atom Count: 2,055
Modeled Residue Count: 227
Deposited Residue Count: 241
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Molybdate ABC transporter substrate-binding protein	A	241	Acinetobacter baumannii	Mutation(s): 0 Gene Names: modA, ATCC19606_17990
UniProt
Find proteins for A0A6F8TFE1 (Acinetobacter baumannii) Explore A0A6F8TFE1 Go to UniProtKB: A0A6F8TFE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A6F8TFE1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MOO (Subject of Investigation/LOI) Query on MOO Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	MOLYBDATE ION Mo O₄ MEFBJEMVZONFCJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.39 Å
R-Value Free: 0.194 (Depositor), 0.194 (DCC)
R-Value Work: 0.162 (Depositor), 0.162 (DCC)
R-Value Observed: 0.163 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.628	α = 90
b = 39.949	β = 109.436
c = 79.301	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2024-12-11

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-12-11
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.