8ZDU | pdb_00008zdu

Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C34 symmetry applied


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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This is version 1.2 of the entry. See complete history


Literature

Structural basis for assembly and function of the Salmonella flagellar MS-ring with three different symmetries.

Kinoshita, M.Makino, F.Miyata, T.Imada, K.Namba, K.Minamino, T.

(2025) Commun Biol 8: 61-61

  • DOI: https://doi.org/10.1038/s42003-025-07485-2
  • Primary Citation of Related Structures:  
    8ZDS, 8ZDT, 8ZDU

  • PubMed Abstract: 

    The flagellar MS-ring is the initial template for flagellar assembly and houses the flagellar protein export complex. The MS-ring has three parts of different symmetries within the ring structure by assembly of FliF subunits in two different conformations with distinct arrangements of three ring-building motifs, RBM1, RBM2, and RBM3. However, it remains unknown how these symmetries are generated. A combination of cryoEM structure and structure-based mutational analyses demonstrates that the well-conserved DQxGxxL motif in the RBM2-RBM3 hinge loop allows RBM2 to take two different orientations relative to RBM3. Of 34 FliF subunits of the MS-ring in the basal body, 23 RBM2 domains form an inner ring with a central pore that accommodates the flagellar protein export complex, and the remaining 11 RBM2 domains form 11 cog-like structures together with RBM1 domains just outside the inner RBM2-ring. We propose that a dimer of FliF with two different conformations initiates MS-ring assembly.


  • Organizational Affiliation
    • Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar M-ring protein560Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
Gene Names: fliFfla AII.1fla BISTM1969
UniProt
Find proteins for P15928 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P15928 
Go to UniProtKB:  P15928
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15928
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.20.1-4487
MODEL REFINEMENTCoot0.9.8.7

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)JapanJP20K15749
Japan Society for the Promotion of Science (JSPS)JapanJP22K06162
Japan Society for the Promotion of Science (JSPS)JapanJP19H03182
Japan Society for the Promotion of Science (JSPS)JapanJP22H02573
Japan Society for the Promotion of Science (JSPS)JapanJP22K19274
Japan Agency for Medical Research and Development (AMED)JapanJP19am0101117
Japan Agency for Medical Research and Development (AMED)JapanJP21am0101117
Japan Agency for Medical Research and Development (AMED)JapanJP17pc0101020
Ministry of Education, Culture, Sports, Science and Technology (Japan)JapanJP20H05532
Ministry of Education, Culture, Sports, Science and Technology (Japan)JapanJP22H04844

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-01
    Type: Initial release
  • Version 1.1: 2025-01-22
    Changes: Data collection, Data processing
  • Version 1.2: 2025-04-23
    Changes: Data collection, Database references