8Z4A | pdb_00008z4a

Solution Structure of DRB4 C-terminal domain, DRB4D3

PDB DOI: https://doi.org/10.2210/pdb8Z4A/pdb

Classification: PLANT PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-04-17 Released: 2025-04-23
Deposition Author(s): Deshmukh, M.V., Paturi, S., Patra, D.
Funding Organization(s): Council of Scientific & Industrial Research (CSIR)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 5000
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

The mechanism of DRB7.2:DRB4 mediated sequestering of endogenous inverted-repeat dsRNA precursors in plants

Paturi, S., Patra, D., Behera, P.C., Aute, R., Waghela, N., Kinatukara, P., Deshmukh, M.V.

(2025) Elife

DOI: https://doi.org/10.7554/elife.105762.1

Macromolecule Content

Total Structure Weight: 8.27 kDa
Atom Count: 307
Modeled Residue Count: 37
Deposited Residue Count: 71
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Double-stranded RNA-binding protein 4	A	71	Arabidopsis thaliana	Mutation(s): 0 Gene Names: DBR4
UniProt
Find proteins for Q8H1D4 (Arabidopsis thaliana) Explore Q8H1D4 Go to UniProtKB: Q8H1D4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8H1D4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 5000
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-04-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Council of Scientific & Industrial Research (CSIR)	India	MLP0161

Revision History (Full details and data files)

Version 1.0: 2025-04-23
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.