8YR0 | pdb_00008yr0

Cryo-EM Structure of AdeG from Acinetobacter baumannii

• PDB DOI: https://doi.org/10.2210/pdb8YR0/pdb
• EM Map EMD-39532: EMDB EMDataResource

• Classification: MEMBRANE PROTEIN
• Organism(s): Acinetobacter baumannii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-03-20 Released: 2025-01-01 
• Deposition Author(s): Ouyang, Z., Wen, Y., Zhu, L.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.06 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM Structure of AdeG from Acinetobacter baumannii

Ouyang, Z., Wen, Y., Zhu, L.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 338.94 kDa 
• Atom Count: 23,128 
• Modeled Residue Count: 3,084 
• Deposited Residue Count: 3,114 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cation/multidrug efflux pump	A, B, C	1,038	Acinetobacter baumannii	Mutation(s): 0  Gene Names: bepE, NCTC13305_03603

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
LMT	D [auth A], E [auth A], F [auth B], G [auth B], H [auth C], I [auth C]	DODECYL-BETA-D-MALTOSIDE C24 H46 O11 NLEBIOOXCVAHBD-QKMCSOCLSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.06 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-01-01 
Deposition Author(s): Ouyang, Z., Wen, Y., Zhu, L.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	82102402
National Natural Science Foundation of China (NSFC)	China	82072237
National Natural Science Foundation of China (NSFC)	China	32170187
National Natural Science Foundation of China (NSFC)	China	31600593

Revision History  

• Version 1.0: 2025-01-01
  Type: Initial release
  
• Version 1.1: 2025-07-23
  Changes: Data collection