8YE5 | pdb_00008ye5

Structural and functional research of Reductive Dehalogenases TmrC using a cell-free expression system for heterologous expression

PDB DOI: https://doi.org/10.2210/pdb8YE5/pdb

Classification: GENE REGULATION
Organism(s): Dehalobacter sp.
Expression System: Cell-free gateway cloning vector N-term 8xHis mcherry pCellFree_G05
Mutation(s): No

Deposited: 2024-02-21 Released: 2024-03-06
Deposition Author(s): Zhang, X.Y., Liu, Y.Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free:
0.213 (Depositor), 0.211 (DCC)
R-Value Work:
0.184 (Depositor), 0.184 (DCC)
R-Value Observed:
0.185 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 8YE5

This is version 1.0 of the entry. See complete history.

Literature

Structural and functional research of Reductive Dehalogenases TmrC using a cell-free expression system for heterologous expression

Zhang, X.Y., Liu, Y.Q.

To be published.

Macromolecule Content

Total Structure Weight: 29.1 kDa
Atom Count: 2,189
Modeled Residue Count: 244
Deposited Residue Count: 258
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TmrC	A, B	129	Dehalobacter sp.	Mutation(s): 0

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.213 (Depositor), 0.211 (DCC)
R-Value Work: 0.184 (Depositor), 0.184 (DCC)
R-Value Observed: 0.185 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.202	α = 90
b = 31.59	β = 109.88
c = 65.651	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-03-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	42377012

Revision History (Full details and data files)

Version 1.0: 2024-03-06
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.