8Y7M | pdb_00008y7m

FluPol-NS2 complex (local refinement)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.3 of the entry. See complete history


Literature

NS2 induces an influenza A RNA polymerase hexamer and acts as a transcription to replication switch.

Sun, J.Kuai, L.Zhang, L.Xie, Y.Zhang, Y.Li, Y.Peng, Q.Shao, Y.Yang, Q.Tian, W.X.Zhu, J.Qi, J.Shi, Y.Deng, T.Gao, G.F.

(2024) EMBO Rep 25: 4708-4727

  • DOI: https://doi.org/10.1038/s44319-024-00208-4
  • Primary Citation of Related Structures:  
    8Y7M, 8Y7O

  • PubMed Abstract: 

    Genome transcription and replication of influenza A virus (FluA), catalyzed by viral RNA polymerase (FluAPol), are delicately controlled across the virus life cycle. A switch from transcription to replication occurring at later stage of an infection is critical for progeny virion production and viral non-structural protein NS2 has been implicated in regulating the switch. However, the underlying regulatory mechanisms and the structure of NS2 remained elusive for years. Here, we determine the cryo-EM structure of the FluAPol-NS2 complex at ~3.0 Å resolution. Surprisingly, three domain-swapped NS2 dimers arrange three symmetrical FluPol dimers into a highly ordered barrel-like hexamer. Further structural and functional analyses demonstrate that NS2 binding not only hampers the interaction between FluAPol and the Pol II CTD because of steric conflicts, but also impairs FluAPol transcriptase activity by stalling it in the replicase conformation. Moreover, this is the first visualization of the full-length NS2 structure. Our findings uncover key molecular mechanisms of the FluA transcription-replication switch and have implications for the development of antivirals.


  • Organizational Affiliation
    • College of Veterinary Medicine, Shanxi Agricultural University, Jinzhong, 030801, China.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Polymerase acidic proteinA [auth E],
D [auth A]
729Influenza A virus (A/nt/60/1968(H3N2))Mutation(s): 0 
Gene Names: PA
EC: 3.1
UniProt
Find proteins for P03434 (Influenza A virus (strain A/Northern Territory/60/1968 H3N2))
Explore P03434 
Go to UniProtKB:  P03434
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UniProt GroupP03434
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-directed RNA polymerase catalytic subunitB [auth F],
E [auth B]
757Influenza A virus (A/Hong Kong/1/1968(H3N2))Mutation(s): 0 
Gene Names: PB1
EC: 2.7.7.48
UniProt
Find proteins for Q910D6 (Influenza A virus (strain A/Hong Kong/1/1968 H3N2))
Explore Q910D6 
Go to UniProtKB:  Q910D6
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UniProt GroupQ910D6
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Polymerase basic protein 2C [auth G],
F [auth C]
792Influenza A virus (A/nt/60/1968(H3N2))Mutation(s): 1 
Gene Names: PB2
UniProt
Find proteins for P03429 (Influenza A virus (strain A/Northern Territory/60/1968 H3N2))
Explore P03429 
Go to UniProtKB:  P03429
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UniProt GroupP03429
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Nuclear export proteinG [auth I],
H [auth J]
121Influenza A virus (A/Hong Kong/1/1968(H3N2))Mutation(s): 0 
Gene Names: NS
UniProt
Find proteins for Q910E4 (Influenza A virus (strain A/Hong Kong/1/1968 H3N2))
Explore Q910E4 
Go to UniProtKB:  Q910E4
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81871658
National Natural Science Foundation of China (NSFC)China32192452

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-24
    Type: Initial release
  • Version 1.1: 2024-12-04
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2024-12-11
    Changes: Data collection, Database references
  • Version 1.3: 2025-07-02
    Changes: Data collection