8Y1O | pdb_00008y1o

Cryo-EM structure of human ABCA7 in the apo state

PDB DOI: https://doi.org/10.2210/pdb8Y1O/pdb
EM Map EMD-38841: EMDB EMDataResource

Classification: LIPID TRANSPORT
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2024-01-25 Released: 2025-02-12
Deposition Author(s): Fang, S.C.
Funding Organization(s): Ministry of Science and Technology (MoST, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Cryo-EM structure of human ABCA7 in the apo state

Fang, S.C., Zhou, C.Z., Hou, W.T., Chen, Y.

To be published.

Macromolecule Content

Total Structure Weight: 234.6 kDa
Atom Count: 14,226
Modeled Residue Count: 1,844
Deposited Residue Count: 2,146
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phospholipid-transporting ATPase ABCA7	A	2,146	Homo sapiens	Mutation(s): 0 Gene Names: ABCA7 EC: 7.6.2.1 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IZY2 (Homo sapiens) Explore Q8IZY2 Go to UniProtKB: Q8IZY2
PHAROS: Q8IZY2 GTEx: ENSG00000064687
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8IZY2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.92 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-02-12

Deposition Author(s):

Funding Organization	Location	Grant Number
Ministry of Science and Technology (MoST, China)	China	2020YFA0509302

Revision History (Full details and data files)

Version 1.0: 2025-02-12
Type: Initial release
Version 1.1: 2025-07-23
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.