8Y0P

Beta-Catenin in complex with peptide 301

• PDB DOI: https://doi.org/10.2210/pdb8Y0P/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2024-01-22 Released: 2024-04-17 
• Deposition Author(s): Tim, F.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.62 Å
• R-Value Free: 0.279 
• R-Value Work: 0.239 
• R-Value Observed: 0.241 

Literature

Beta-Catenin in complex with peptide 301

Tim, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 123.92 kDa 
• Atom Count: 7,755 
• Modelled Residue Count: 1,034 
• Deposited Residue Count: 1,122 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Catenin beta-1	A, B	549	Homo sapiens	Mutation(s): 0  Gene Names: CTNNB1, CTNNB, OK/SW-cl.35, PRO2286
UniProt & NIH Common Fund Data Resources
Find proteins for P35222 (Homo sapiens) Explore P35222  Go to UniProtKB:  P35222
PHAROS:  P35222 GTEx:  ENSG00000168036

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
B-cell CLL/lymphoma 9 protein	C [auth L]	24	Homo sapiens	Mutation(s): 1  Gene Names: BCL9
UniProt & NIH Common Fund Data Resources
Find proteins for O00512 (Homo sapiens) Explore O00512  Go to UniProtKB:  O00512
PHAROS:  O00512 GTEx:  ENSG00000116128

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PRO (Subject of Investigation/LOI)	D [auth A], E [auth A], F [auth A], G [auth B]	PROLINE C5 H9 N O2 ONIBWKKTOPOVIA-BYPYZUCNSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
NAL	C [auth L]	L-PEPTIDE LINKING	C13 H13 N O2		ALA

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.62 Å
• R-Value Free: 0.279 
• R-Value Work: 0.239 
• R-Value Observed: 0.241 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.921	α = 90
b = 100.758	β = 90
c = 187.32	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
PHASER	phasing
HKL-2000	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-17 
Deposition Author(s): Tim, F.

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Funding Organization	Location	Grant Number
Other private		--

Revision History  

• Version 1.0: 2024-04-17
  Type: Initial release