8XB6 | pdb_00008xb6

Portal-vertex of SH-Ab15497 in C1 symmetry

PDB DOI: https://doi.org/10.2210/pdb8XB6/pdb
EM Map EMD-38212: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Acinetobacter phage SH-Ab 15497
Mutation(s): No

Deposited: 2023-12-05 Released: 2024-12-11
Deposition Author(s): Lin, J., Zhao, S.W.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Portal-vertex of SH-Ab15497 in C1 symmetry

Lin, J., Zhao, S.W.

To be published.

Macromolecule Content

Total Structure Weight: 1,026.77 kDa
Atom Count: 66,825
Modeled Residue Count: 8,575
Deposited Residue Count: 9,282
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Portal protein	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	506	Acinetobacter phage SH-Ab 15497	Mutation(s): 0
UniProt
Find proteins for A0ACD6B910 (Acinetobacter phage SH-Ab 15497) Explore A0ACD6B910 Go to UniProtKB: A0ACD6B910
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6B910
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V	321	Acinetobacter phage SH-Ab 15497	Mutation(s): 0
UniProt
Find proteins for A0ACD6B911 (Acinetobacter phage SH-Ab 15497) Explore A0ACD6B911 Go to UniProtKB: A0ACD6B911
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6B911
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-12-11

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	32370704
National Natural Science Foundation of China (NSFC)	China	32122024

Revision History (Full details and data files)

Version 1.0: 2024-12-11
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.