8X5H | pdb_00008x5h

The cryo-EM structure of TMEM106B amyloid fibril in PD patient.

• PDB DOI: https://doi.org/10.2210/pdb8X5H/pdb
• EM Map EMD-38069: EMDB EMDataResource

• Classification: PROTEIN FIBRIL
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2023-11-17 Released: 2024-11-20 
• Deposition Author(s): Zhao, Q.Y., Fan, Y., Zhao, W.B., Li, D., Liu, C.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.47 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Literature

The cryo-EM structure of TMEM106B amyloid fibril in PD patient.

Zhao, Q.Y., Fan, Y., Zhao, W.B., Li, D., Liu, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 93.47 kDa 
• Atom Count: 3,258 
• Modeled Residue Count: 405 
• Deposited Residue Count: 822 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transmembrane protein 106B	A [auth B], B [auth A], C	274	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NUM4 (Homo sapiens) Explore Q9NUM4  Go to UniProtKB:  Q9NUM4
PHAROS:  Q9NUM4 GTEx:  ENSG00000106460

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.47 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-11-20 
Deposition Author(s): Zhao, Q.Y., Fan, Y., Zhao, W.B., Li, D., Liu, C.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-11-20
  Type: Initial release
  
• Version 1.1: 2025-07-02
  Changes: Data collection