8WUA | pdb_00008wua

cryo-EM structure of human TMEM63A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8WUA

This is version 1.4 of the entry. See complete history

Literature

A monomeric structure of human TMEM63A protein.

Wu, X.Shang, T.Lu, X.Luo, D.Yang, D.

(2024) Proteins 92: 750-756

  • DOI: https://doi.org/10.1002/prot.26660
  • Primary Citation Related Structures: 
    8WUA

  • PubMed Abstract: 

    OSCA/TMEM63 is a newly identified family of mechanically activated (MA) ion channels in plants and animals, respectively, which convert physical forces into electrical signals or trigger intracellular cascades and are essential for eukaryotic physiology. OSCAs and related TMEM16s and transmembrane channel-like (TMC) proteins form homodimers with two pores. However, the molecular architecture of the mammalian TMEM63 proteins remains unclear. Here we elucidate the structure of human TMEM63A in the presence of calcium by single particle cryo-EM, revealing a distinct monomeric architecture containing eleven transmembrane helices. It has structural similarity to the single subunit of the Arabidopsis thaliana OSCA proteins. We locate the ion permeation pathway within the monomeric configuration and observe a nonprotein density resembling lipid. These results lay a foundation for understanding the structural organization of OSCA/TMEM63A family proteins.


  • Organizational Affiliation
    • Department of Urology, Institute of Urology (Laboratory of Reconstructive Urology), West China Hospital, Sichuan University, Chengdu, China.

Macromolecule Content 

  • Total Structure Weight: 82.33 kDa 
  • Atom Count: 5,494 
  • Modeled Residue Count: 675 
  • Deposited Residue Count: 714 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
CSC1-like protein 1714Homo sapiensMutation(s): 0 
Gene Names: TMEM63A
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O94886 (Homo sapiens)
Explore O94886 
Go to UniProtKB:  O94886
PHAROS:  O94886
GTEx:  ENSG00000196187 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO94886
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data

  • Released Date: 2024-01-24 
  • Deposition Author(s): Yang, D.

Funding OrganizationLocationGrant Number
Other privateChina--

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-24
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Database references
  • Version 1.2: 2024-05-08
    Changes: Database references
  • Version 1.3: 2024-10-30
    Changes: Data collection, Structure summary
  • Version 1.4: 2025-07-02
    Changes: Data collection