8WI3 | pdb_00008wi3

ND-hMRP5-inward open


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.38 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8WI3

This is version 1.1 of the entry. See complete history

Literature

Inhibition and transport mechanisms of the ABC transporter hMRP5.

Huang, Y.Xue, C.Bu, R.Wu, C.Li, J.Zhang, J.Chen, J.Shi, Z.Chen, Y.Wang, Y.Liu, Z.

(2024) Nat Commun 15: 4811-4811

  • DOI: https://doi.org/10.1038/s41467-024-49204-1
  • Primary Citation Related Structures: 
    8KCI, 8WI0, 8WI2, 8WI3, 8WI4, 8WI5

  • PubMed Abstract: 

    Human multidrug resistance protein 5 (hMRP5) effluxes anticancer and antivirus drugs, driving multidrug resistance. To uncover the mechanism of hMRP5, we determine six distinct cryo-EM structures, revealing an autoinhibitory N-terminal peptide that must dissociate to permit subsequent substrate recruitment. Guided by these molecular insights, we design an inhibitory peptide that could block substrate entry into the transport pathway. We also identify a regulatory motif, comprising a positively charged cluster and hydrophobic patches, within the first nucleotide-binding domain that modulates hMRP5 localization by engaging with membranes. By integrating our structural, biochemical, computational, and cell biological findings, we propose a model for hMRP5 conformational cycling and localization. Overall, this work provides mechanistic understanding of hMRP5 function, while informing future selective hMRP5 inhibitor development. More broadly, this study advances our understanding of the structural dynamics and inhibition of ABC transporters.


  • Organizational Affiliation
    • Shenzhen Key Labortory of Biomolecular Assembling and Regulation, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518055, Guangdong, China.

Macromolecule Content 

  • Total Structure Weight: 164.45 kDa 
  • Atom Count: 9,489 
  • Modeled Residue Count: 1,208 
  • Deposited Residue Count: 1,473 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ATP-binding cassette sub-family C member 51,473Homo sapiensMutation(s): 0 
Gene Names: ABCC5MRP5
EC: 7.6.2 (PDB Primary Data), 7.6.2.2 (PDB Primary Data)
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O15440 (Homo sapiens)
Explore O15440 
Go to UniProtKB:  O15440
PHAROS:  O15440
GTEx:  ENSG00000114770 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15440
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.38 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China--

Revision History  (Full details and data files)

  • Version 1.0: 2024-07-03
    Type: Initial release
  • Version 1.1: 2025-07-23
    Changes: Data collection, Structure summary