8WC1 | pdb_00008wc1

A carbohydrate binding domain of a putative pectate lyase

• PDB DOI: https://doi.org/10.2210/pdb8WC1/pdb

• Classification: LYASE
• Organism(s): Monoglobus pectinilyticus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-09-11 Released: 2024-09-18 
• Deposition Author(s): Liu, G.C., Chang, Y.G.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 
  0.184 (Depositor), 0.183 (DCC) 
• R-Value Work: 
  0.171 (Depositor), 0.171 (DCC) 
• R-Value Observed: 
  0.172 (Depositor) 

Starting Model: in silico

Literature

Structure of a carbohydrate binding domain at 1.30 Angstroms resolution

Liu, G.C., Chang, Y.G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 19.24 kDa 
• Atom Count: 1,398 
• Modeled Residue Count: 151 
• Deposited Residue Count: 178 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pectate lyase family 9	A	178	Monoglobus pectinilyticus	Mutation(s): 0  Gene Names: B9O19_00428
UniProt
Find proteins for A0A2K9P019 (Monoglobus pectinilyticus) Explore A0A2K9P019  Go to UniProtKB:  A0A2K9P019

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free:  0.184 (Depositor), 0.183 (DCC) 
• R-Value Work:  0.171 (Depositor), 0.171 (DCC) 
• R-Value Observed: 0.172 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.957	α = 90
b = 52.19	β = 90
c = 71.023	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-18 
Deposition Author(s): Liu, G.C., Chang, Y.G.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-09-18
  Type: Initial release