8WAG

Crystal structure of the C-terminal fragment (residues 716-982) of Arabidopsis thaliana CHUP1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.176 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

CHLOROPLAST UNUSUAL POSITIONING 1 is a plant-specific actin polymerization factor regulating chloroplast movement.

Kong, S.G.Yamazaki, Y.Shimada, A.Kijima, S.T.Hirose, K.Katoh, K.Ahn, J.Song, H.G.Han, J.W.Higa, T.Takano, A.Nakamura, Y.Suetsugu, N.Kohda, D.Uyeda, T.Q.P.Wada, M.

(2024) Plant Cell 36: 1159-1181

  • DOI: https://doi.org/10.1093/plcell/koad320
  • Primary Citation of Related Structures:  
    8WAF, 8WAG

  • PubMed Abstract: 

    Plants have unique responses to fluctuating light conditions. One such response involves chloroplast photorelocation movement, which optimizes photosynthesis under weak light by the accumulation of chloroplasts along the periclinal side of the cell, which prevents photodamage under strong light by avoiding chloroplast positioning toward the anticlinal side of the cell. This light-responsive chloroplast movement relies on the reorganization of chloroplast actin (cp-actin) filaments. Previous studies have suggested that CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1) is essential for chloroplast photorelocation movement as a regulator of cp-actin filaments. In this study, we conducted comprehensive analyses to understand CHUP1 function. Functional, fluorescently-tagged CHUP1 colocalized with and was coordinately reorganized with cp-actin filaments on the chloroplast outer envelope during chloroplast movement in Arabidopsis thaliana. CHUP1 distribution was reversibly regulated in a blue light- and phototropin-dependent manner. X-ray crystallography revealed that the CHUP1 C-terminal domain shares structural homology with the formin homology 2 (FH2) domain, despite lacking sequence similarity. Furthermore, the CHUP1 C-terminal domain promoted actin polymerization in the presence of profilin in vitro. Taken together, our findings indicate that CHUP1 is a plant-specific actin polymerization factor that has convergently evolved to assemble cp-actin filaments and enables chloroplast photorelocation movement.


  • Organizational Affiliation

    Department of Biological Sciences, College of Natural Sciences, Kongju National University, Chungnam 32588, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein CHUP1, chloroplastic
A, B
272Arabidopsis thalianaMutation(s): 0 
Gene Names: CHUP1
UniProt
Find proteins for Q9LI74 (Arabidopsis thaliana)
Explore Q9LI74 
Go to UniProtKB:  Q9LI74
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9LI74
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.174 
  • R-Value Observed: 0.176 
  • Space Group: I 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 180.702α = 90
b = 180.702β = 90
c = 180.702γ = 90
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)JapanKAKENHI 24687014
Japan Society for the Promotion of Science (JSPS)JapanKAKENHI 25121726
Japan Society for the Promotion of Science (JSPS)JapanKAKENHI 17K07309
Japan Society for the Promotion of Science (JSPS)JapanKAKENHI 26119002

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-17
    Type: Initial release
  • Version 1.1: 2024-04-10
    Changes: Database references