8W8D

Structural mechanism of inhibition of the Rho transcription termination factor by Rof


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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Literature

A widely conserved protein Rof inhibits transcription termination factor Rho and promotes Salmonella virulence program.

Zhang, J.Zhang, S.Zhou, W.Zhang, X.Li, G.Li, R.Lin, X.Chen, Z.Liu, F.Shen, P.Zhou, X.Gao, Y.Chen, Z.Chao, Y.Wang, C.

(2024) Nat Commun 15: 3187-3187

  • DOI: https://doi.org/10.1038/s41467-024-47438-7
  • Primary Citation of Related Structures:  
    8W8D

  • PubMed Abstract: 

    Transcription is crucial for the expression of genetic information and its efficient and accurate termination is required for all living organisms. Rho-dependent termination could rapidly terminate unwanted premature RNAs and play important roles in bacterial adaptation to changing environments. Although Rho has been discovered for about five decades, the regulation mechanisms of Rho-dependent termination are still not fully elucidated. Here we report that Rof is a conserved antiterminator and determine the cryogenic electron microscopy structure of Rho-Rof antitermination complex. Rof binds to the open-ring Rho hexamer and inhibits the initiation of Rho-dependent termination. Rof's N-terminal α-helix undergoes conformational changes upon binding with Rho, and is key in facilitating Rof-Rho interactions. Rof binds to Rho's primary binding site (PBS) and excludes Rho from binding with PBS ligand RNA at the initiation step. Further in vivo analyses in Salmonella Typhimurium show that Rof is required for virulence gene expression and host cell invasion, unveiling a physiological function of Rof and transcription termination in bacterial pathogenesis.


  • Organizational Affiliation

    CAS Key Laboratory of Molecular Virology and Immunology, Center for Microbes, Development and Health (CMDH), Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription termination factor Rho
A, B, C, D, E
A, B, C, D, E, F
419Escherichia coli K-12Mutation(s): 0 
Gene Names: rhonitApsuArnsCsbaAtsub3783JW3756
EC: 3.6.4
UniProt
Find proteins for P0AG30 (Escherichia coli (strain K12))
Explore P0AG30 
Go to UniProtKB:  P0AG30
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AG30
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein rof84Escherichia coli K-12Mutation(s): 0 
Gene Names: rofyaeOb0189JW0184
UniProt
Find proteins for P0AFW8 (Escherichia coli (strain K12))
Explore P0AFW8 
Go to UniProtKB:  P0AFW8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AFW8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32270039

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release