Download MendeleyCrystal structure of Acetyl-CoA synthetase 2 from Candida albicans in complex with an isopropyl AMP ester inhibitor
Liu, L., Lovell, S., Battaile, K.P.To be published.
8W0D
Crystal structure of Acetyl-CoA synthetase 2 from Candida albicans in complex with an isopropyl AMP ester inhibitor
- PDB DOI: https://doi.org/10.2210/pdb8W0D/pdb
- Classification: LIGASE
- Organism(s): Candida albicans
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2024-02-13 Released: 2024-02-21
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.226
- R-Value Work: 0.184
- R-Value Observed: 0.186
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acetyl-coenzyme A synthetase 2 | 686 | Candida albicans | Mutation(s): 1 Gene Names: ACS2 |  | |
UniProt | |||||
Find proteins for Q8NJN3 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore Q8NJN3 Go to UniProtKB: Q8NJN3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8NJN3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| YHQ (Subject of Investigation/LOI) Query on YHQ | E [auth A], K [auth B], N [auth C] | 5'-O-{(R)-hydroxy[(propan-2-yl)oxy]phosphoryl}adenosine C13 H20 N5 O7 P UCVFYZHKFZWYCU-QYVSTXNMSA-N |  | ||
| SO4 Query on SO4 | G [auth A], H [auth A], L [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | I [auth A], J [auth A], M [auth B], P [auth C], Q [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | F [auth A], O [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.226
- R-Value Work: 0.184
- R-Value Observed: 0.186
- Space Group: P 61 2 2
- Diffraction Data: https://doi.org/10.18430/M38W0D
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 139.487 | α = 90 |
| b = 139.487 | β = 90 |
| c = 544.117 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-02-21 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | 75N93022C00036 |
| National Institutes of Health/Office of the Director | United States | S10OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2024-02-21
Type: Initial release
