8VTD | pdb_00008vtd

Co-structure of the Fab of the anti-TIGIT Vibostolimab antibody with its antigen


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Free: 
    0.204 (Depositor), 0.195 (DCC) 
  • R-Value Work: 
    0.185 (Depositor), 0.177 (DCC) 
  • R-Value Observed: 
    0.186 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Pharmacological and structural characterization of vibostolimab, a novel anti-TIGIT blocking antibody for cancer immunotherapy.

Fischmann, T.O.Malashock, D.Ahn, E.Wang, H.Pradhan, K.Grein, J.Chakravorty, S.Bahmanjah, S.Ban, D.Chien, E.Hsieh, M.Mayhood, T.Yuan, J.Wong, J.C.Beaumont, M.Baker, J.McCoy, M.A.Cai, M.Wilson, D.Blumenschein, W.Williams, S.M.G.Fayadat-Dilman, L.Seghezzi, W.Keenan, T.Han, J.H.

(2025) J Immunother Cancer 13

  • DOI: https://doi.org/10.1136/jitc-2024-008972
  • Primary Citation of Related Structures:  
    8VTD, 8VTE

  • PubMed Abstract: 

    Vibostolimab is a humanized anti-T cell immunoreceptor with immunoglobulin (Ig) and ITIM domains (TIGIT) antibody was recently investigated in late-stage clinical trials. Vibostolimab was developed based on its specific binding property to the human and cynomolgus monkey TIGIT protein and its functional blocking activity of the TIGIT:CD155 interaction. The biochemical properties of vibostolimab, in a comparison with tiragolumab, were assessed with Biacore, nuclear magnetic resonance (NMR), and X-ray crystallography, while the T-cell activation was examined using engineered Jurkat cells in an in vitro co-culture system by measuring interleukin (IL)-2 production as a readout of T-cell activation. The mouse surrogate anti-TIGIT antibodies were identified and used to extensively investigate the mechanism of action of anti-TIGIT antibodies as monotherapy or in combination with anti-programmed cell death protein-1 (PD-1) antibody in vivo by gene expression profiling and flow cytometry analyses with a mouse syngeneic tumor model. Structural analyses with solution NMR and X-ray crystallography revealed that vibostolimab binds the CC'C''FG loop interface of TIGIT, completely competing for the binding site of CD155 with a larger coverage area than another anti-TIGIT antibody tiragolumab, consistent with surface plasmon resonance analysis, though mouse models with similar antibodies revealed no functional difference in antitumor efficacy. Biacore-based binding data indicate that both vibostolimab and tiragolumab bind on TIGIT with comparable binding affinity (KD), but different binding kinetics characterized by faster on and off rates, which may contribute to enhanced T-cell activation with vibostolimab, as evidenced by greater IL-2 production in an in vitro cell-based assay. Functional experiments in mouse models demonstrated additional detailed biological mechanisms of the mouse equivalent of vibostolimab, including the differentiating role of myeloid cell activation in addition to improved T cell cytolytic activity, both of which are further enhanced by anti-PD-1 combination therapy. Vibostolimab is a novel anti-TIGIT antibody that completely blocks CD155 binding and induces T-cell activation. From experiments using a mouse tumor model and mouse surrogate anti-TIGIT antibody, we demonstrate direct evidence where it not only activates cytotoxic T cells but also induces the activation of antigen-presenting cells. The clinical relevance of vibostolimab, based on these mechanisms, in combination with pembrolizumab was recently tested in registrational trials.


  • Organizational Affiliation
    • Discovery Chemistry, Merck & Co Inc, Rahway, New Jersey, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Vibostolimab Fab Light chain214Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Vibostolimab Fab Heavy chain221Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
T-cell immunoreceptor with Ig and ITIM domains122Homo sapiensMutation(s): 0 
Gene Names: TIGITVSIG9VSTM3
UniProt & NIH Common Fund Data Resources
Find proteins for Q495A1 (Homo sapiens)
Explore Q495A1 
Go to UniProtKB:  Q495A1
PHAROS:  Q495A1
GTEx:  ENSG00000181847 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ495A1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Free:  0.204 (Depositor), 0.195 (DCC) 
  • R-Value Work:  0.185 (Depositor), 0.177 (DCC) 
  • R-Value Observed: 0.186 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.775α = 90
b = 105.996β = 104.4
c = 71.758γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-02
    Type: Initial release
  • Version 1.1: 2025-09-03
    Changes: Database references