8VRD

Rigid body fitted model for free recombinant gamma tubulin ring complex.

• PDB DOI: https://doi.org/10.2210/pdb8VRD/pdb
• EM Map EMD-43481: EMDB EMDataResource

• Classification: CYTOSOLIC PROTEIN
• Organism(s): Homo sapiens
• Expression System: Trichoplusia ni
• Mutation(s): No 


• Deposited: 2024-01-21 Released: 2024-03-27 
• Deposition Author(s): Aher, A., Urnavicius, L., Kapoor, T.M.
• Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 7.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Rigid body fitted model for free recombinant gamma tubulin ring complex.

Aher, A., Urnavicius, L., Kapoor, T.M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 34-mer - A14B5C5D2E2F1G1H1I1J1K1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 34-mer - A14B10C2D2E1F1G1H1I1J1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 2,807.02 kDa 
• Atom Count: 67,053 
• Modelled Residue Count: 13,526 
• Deposited Residue Count: 24,818 
• Unique protein chains: 8

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-tubulin complex component 3	A [auth O], GA [auth N], H [auth B], L [auth D], P [auth F], T [auth H]	907	Homo sapiens	Mutation(s): 0  Gene Names: TUBGCP3, GCP3
UniProt & NIH Common Fund Data Resources
Find proteins for Q96CW5 (Homo sapiens) Explore Q96CW5  Go to UniProtKB:  Q96CW5
PHAROS:  Q96CW5 GTEx:  ENSG00000126216

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
TUBGCP6 protein	AA [auth T], B [auth P], Z [auth L]	1,811	Homo sapiens	Mutation(s): 0  Gene Names: TUBGCP6
UniProt
Find proteins for B2RWN4 (Homo sapiens) Explore B2RWN4  Go to UniProtKB:  B2RWN4

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitotic-spindle organizing protein 1	C [auth Q], D [auth R]	82	Homo sapiens	Mutation(s): 0  Gene Names: MZT1, C13orf37, MOZART1
UniProt & NIH Common Fund Data Resources
Find proteins for Q08AG7 (Homo sapiens) Explore Q08AG7  Go to UniProtKB:  Q08AG7
PHAROS:  Q08AG7 GTEx:  ENSG00000204899

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Actin, cytoplasmic 1	E [auth S]	375	Homo sapiens	Mutation(s): 0  Gene Names: ACTB
UniProt & NIH Common Fund Data Resources
Find proteins for P60709 (Homo sapiens) Explore P60709  Go to UniProtKB:  P60709
PHAROS:  P60709 GTEx:  ENSG00000075624

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 3 of Gamma-tubulin complex component 2	EA [auth M], F [auth A], J [auth C], N [auth E], R [auth G]	930	Homo sapiens	Mutation(s): 0  Gene Names: TUBGCP2, GCP2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BSJ2 (Homo sapiens) Explore Q9BSJ2  Go to UniProtKB:  Q9BSJ2
PHAROS:  Q9BSJ2 GTEx:  ENSG00000130640

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Tubulin gamma-1 chain	BA [auth j], CA [auth k], DA [auth l], FA [auth m], G [auth a], HA [auth n], I [auth b], K [auth c], M [auth d], O [auth e], Q [auth f], S [auth g], U [auth h], V [auth i]	457	Homo sapiens	Mutation(s): 0  Gene Names: TUBG1, TUBG
UniProt & NIH Common Fund Data Resources
Find proteins for P23258 (Homo sapiens) Explore P23258  Go to UniProtKB:  P23258
PHAROS:  P23258 GTEx:  ENSG00000131462

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Isoform 2 of Gamma-tubulin complex component 4	W [auth I], Y [auth K]	666	Homo sapiens	Mutation(s): 0  Gene Names: TUBGCP4, 76P, GCP4
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UGJ1 (Homo sapiens) Explore Q9UGJ1  Go to UniProtKB:  Q9UGJ1
PHAROS:  Q9UGJ1 GTEx:  ENSG00000137822

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-tubulin complex component 5	X [auth J]	1,024	Homo sapiens	Mutation(s): 0  Gene Names: TUBGCP5, GCP5, KIAA1899
UniProt & NIH Common Fund Data Resources
Find proteins for Q96RT8 (Homo sapiens) Explore Q96RT8  Go to UniProtKB:  Q96RT8
PHAROS:  Q96RT8 GTEx:  ENSG00000275835

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 7.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-27 
Deposition Author(s): Aher, A., Urnavicius, L., Kapoor, T.M.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)	United States	GM130234

Revision History  

• Version 1.0: 2024-03-27
  Type: Initial release