8VHG | pdb_00008vhg

Structure of the BMAL1/HIF2A heterodimer in Complex with DNA

  • Classification: TRANSCRIPTION/DNA
  • Organism(s): Mus musculus
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2024-01-01 Released: 2025-02-12 
  • Deposition Author(s): Li, T., Tsai, K.L.
  • Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

BMAL1-HIF2A heterodimer modulates circadian variations of myocardial injury.

Ruan, W.Li, T.Bang, I.H.Lee, J.Deng, W.Ma, X.Luo, C.Du, F.Yoo, S.H.Kim, B.Li, J.Yuan, X.Figarella, K.An, Y.A.Wang, Y.Y.Liang, Y.DeBerge, M.Zhang, D.Zhou, Z.Wang, Y.Gorham, J.M.Seidman, J.G.Seidman, C.E.Aranki, S.F.Nair, R.Li, L.Narula, J.Zhao, Z.Gorfe, A.A.Muehlschlegel, J.D.Tsai, K.L.Eltzschig, H.K.

(2025) Nature 641: 1017-1028

  • DOI: https://doi.org/10.1038/s41586-025-08898-z
  • Primary Citation of Related Structures:  
    8VHG

  • PubMed Abstract: 

    Acute myocardial infarction is a leading cause of morbidity and mortality worldwide 1 . Clinical studies have shown that the severity of cardiac injury after myocardial infarction exhibits a circadian pattern, with larger infarcts and poorer outcomes in patients experiencing morning-onset events 2-7 . However, the molecular mechanisms underlying these diurnal variations remain unclear. Here we show that the core circadian transcription factor BMAL1 7-11 regulates circadian-dependent myocardial injury by forming a transcriptionally active heterodimer with a non-canonical partner-hypoxia-inducible factor 2 alpha (HIF2A) 12-16 -in a diurnal manner. To substantiate this finding, we determined the cryo-EM structure of the BMAL1-HIF2A-DNA complex, revealing structural rearrangements within BMAL1 that enable cross-talk between circadian rhythms and hypoxia signalling. BMAL1 modulates the circadian hypoxic response by enhancing the transcriptional activity of HIF2A and stabilizing the HIF2A protein. We further identified amphiregulin (AREG) 16,17 as a rhythmic target of the BMAL1-HIF2A complex, critical for regulating daytime variations of myocardial injury. Pharmacologically targeting the BMAL1-HIF2A-AREG pathway provides cardioprotection, with maximum efficacy when aligned with the pathway's circadian phase. These findings identify a mechanism governing circadian variations of myocardial injury and highlight the therapeutic potential of clock-based pharmacological interventions for treating ischaemic heart disease.


  • Organizational Affiliation
    • Department of Anesthesiology, Critical Care and Pain Medicine, The University of Texas Health Science Center at Houston, McGovern Medical School, Houston, TX, USA. Wei.Ruan@uth.tmc.edu.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Endothelial PAS domain-containing protein 1380Mus musculusMutation(s): 0 
Gene Names: Epas1Hif2a
UniProt & NIH Common Fund Data Resources
Find proteins for P97481 (Mus musculus)
Explore P97481 
Go to UniProtKB:  P97481
IMPC:  MGI:109169
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UniProt GroupP97481
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Basic helix-loop-helix ARNT-like protein 1436Mus musculusMutation(s): 0 
Gene Names: Bmal1Arntl
UniProt
Find proteins for Q9WTL8 (Mus musculus)
Explore Q9WTL8 
Go to UniProtKB:  Q9WTL8
Entity Groups  
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UniProt GroupQ9WTL8
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  • Reference Sequence

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Entity ID: 3
MoleculeChains LengthOrganismImage
Reverse strand DNA containing HRE motif24Mus musculus
Sequence Annotations
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  • Reference Sequence

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Entity ID: 4
MoleculeChains LengthOrganismImage
Forward strand DNA containing HRE motif24Mus musculus
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2025-02-12
    Type: Initial release
  • Version 1.1: 2025-04-23
    Changes: Data collection, Database references
  • Version 1.2: 2025-05-07
    Changes: Data collection, Database references
  • Version 1.3: 2025-06-04
    Changes: Data collection, Database references