8VAV | pdb_00008vav

Human Slo1 - human LRRC26 in presence of EDTA - GR masked

PDB DOI: https://doi.org/10.2210/pdb8VAV/pdb
EM Map EMD-43106: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMD

Deposited: 2023-12-11 Released: 2024-12-25
Deposition Author(s): Pal, K., Kallure, G.S., Chowdhury, S.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.13 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Human Slo1 - human LRRC26 in presence of EDTA - GR masked

Pal, K., Kallure, G., Chowdhury, S.

To be published.

Macromolecule Content

Total Structure Weight: 680.65 kDa
Atom Count: 18,532
Modeled Residue Count: 2,096
Deposited Residue Count: 5,636
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Calcium-activated potassium channel subunit alpha-1	A, B, C, D	1,065	Homo sapiens	Mutation(s): 0 Gene Names: KCNMA1, KCNMA, SLO Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q12791 (Homo sapiens) Explore Q12791 Go to UniProtKB: Q12791
PHAROS: Q12791 GTEx: ENSG00000156113
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q12791
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Leucine-rich repeat-containing protein 26	E, F, G, H	344	Homo sapiens	Mutation(s): 0 Gene Names: LRRC26 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q2I0M4 (Homo sapiens) Explore Q2I0M4 Go to UniProtKB: Q2I0M4
PHAROS: Q2I0M4 GTEx: ENSG00000184709
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2I0M4
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain E Focus chain F Focus chain G Focus chain H	Go to GlyGen: Q2I0M4-1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AJP (Subject of Investigation/LOI) Query on AJP Download Ideal Coordinates CCD File SDF format, chain AB [auth C] SDF format, chain FA [auth B] SDF format, chain GA [auth B] SDF format, chain HA [auth B] SDF format, chain HB [auth D] SDF format, chain IA [auth B] SDF format, chain IB [auth D] SDF format, chain JA [auth B] SDF format, chain JB [auth D] SDF format, chain KA [auth B] SDF format, chain KB [auth D] SDF format, chain LA [auth B] SDF format, chain LB [auth D] SDF format, chain MA [auth B] SDF format, chain MB [auth D] SDF format, chain NB [auth D] SDF format, chain OB [auth D] SDF format, chain R [auth A] SDF format, chain S [auth A] SDF format, chain T [auth A] SDF format, chain TA [auth C] SDF format, chain U [auth A] SDF format, chain UA [auth C] SDF format, chain V [auth A] SDF format, chain VA [auth C] SDF format, chain W [auth A] SDF format, chain WA [auth C] SDF format, chain X [auth A] SDF format, chain XA [auth C] SDF format, chain Y [auth A] SDF format, chain YA [auth C] SDF format, chain ZA [auth C] MOL2 format, chain AB [auth C] MOL2 format, chain FA [auth B] MOL2 format, chain GA [auth B] MOL2 format, chain HA [auth B] MOL2 format, chain HB [auth D] MOL2 format, chain IA [auth B] MOL2 format, chain IB [auth D] MOL2 format, chain JA [auth B] MOL2 format, chain JB [auth D] MOL2 format, chain KA [auth B] MOL2 format, chain KB [auth D] MOL2 format, chain LA [auth B] MOL2 format, chain LB [auth D] MOL2 format, chain MA [auth B] MOL2 format, chain MB [auth D] MOL2 format, chain NB [auth D] MOL2 format, chain OB [auth D] MOL2 format, chain R [auth A] MOL2 format, chain S [auth A] MOL2 format, chain T [auth A] MOL2 format, chain TA [auth C] MOL2 format, chain U [auth A] MOL2 format, chain UA [auth C] MOL2 format, chain V [auth A] MOL2 format, chain VA [auth C] MOL2 format, chain W [auth A] MOL2 format, chain WA [auth C] MOL2 format, chain X [auth A] MOL2 format, chain XA [auth C] MOL2 format, chain Y [auth A] MOL2 format, chain YA [auth C] MOL2 format, chain ZA [auth C] mmCIF format, chain AB [auth C] mmCIF format, chain FA [auth B] mmCIF format, chain GA [auth B] mmCIF format, chain HA [auth B] mmCIF format, chain HB [auth D] mmCIF format, chain IA [auth B] mmCIF format, chain IB [auth D] mmCIF format, chain JA [auth B] mmCIF format, chain JB [auth D] mmCIF format, chain KA [auth B] mmCIF format, chain KB [auth D] mmCIF format, chain LA [auth B] mmCIF format, chain LB [auth D] mmCIF format, chain MA [auth B] mmCIF format, chain MB [auth D] mmCIF format, chain NB [auth D] mmCIF format, chain OB [auth D] mmCIF format, chain R [auth A] mmCIF format, chain S [auth A] mmCIF format, chain T [auth A] mmCIF format, chain TA [auth C] mmCIF format, chain U [auth A] mmCIF format, chain UA [auth C] mmCIF format, chain V [auth A] mmCIF format, chain VA [auth C] mmCIF format, chain W [auth A] mmCIF format, chain WA [auth C] mmCIF format, chain X [auth A] mmCIF format, chain XA [auth C] mmCIF format, chain Y [auth A] mmCIF format, chain YA [auth C] mmCIF format, chain ZA [auth C]	AB [auth C] FA [auth B] GA [auth B] HA [auth B] HB [auth D] AB [auth C], FA [auth B], GA [auth B], HA [auth B], HB [auth D], IA [auth B], IB [auth D], JA [auth B], JB [auth D], KA [auth B], KB [auth D], LA [auth B], LB [auth D], MA [auth B], MB [auth D], NB [auth D], OB [auth D], R [auth A], S [auth A], T [auth A], TA [auth C], U [auth A], UA [auth C], V [auth A], VA [auth C], W [auth A], WA [auth C], X [auth A], XA [auth C], Y [auth A], YA [auth C], ZA [auth C]	Digitonin C₅₆ H₉₂ O₂₉ UVYVLBIGDKGWPX-KUAJCENISA-N		Interactions Focus chain AB [auth C] Focus chain FA [auth B] Focus chain GA [auth B] Focus chain HA [auth B] Focus chain HB [auth D] Focus chain IA [auth B] Focus chain IB [auth D] Focus chain JA [auth B] Focus chain JB [auth D] Focus chain KA [auth B] Focus chain KB [auth D] Focus chain LA [auth B] Focus chain LB [auth D] Focus chain MA [auth B] Focus chain MB [auth D] Focus chain NB [auth D] Focus chain OB [auth D] Focus chain R [auth A] Focus chain S [auth A] Focus chain T [auth A] Focus chain TA [auth C] Focus chain U [auth A] Focus chain UA [auth C] Focus chain V [auth A] Focus chain VA [auth C] Focus chain W [auth A] Focus chain WA [auth C] Focus chain X [auth A] Focus chain XA [auth C] Focus chain Y [auth A] Focus chain YA [auth C] Focus chain ZA [auth C] Interactions & Density Focus chain AB [auth C] Focus chain FA [auth B] Focus chain GA [auth B] Focus chain HA [auth B] Focus chain HB [auth D] Focus chain IA [auth B] Focus chain IB [auth D] Focus chain JA [auth B] Focus chain JB [auth D] Focus chain KA [auth B] Focus chain KB [auth D] Focus chain LA [auth B] Focus chain LB [auth D] Focus chain MA [auth B] Focus chain MB [auth D] Focus chain NB [auth D] Focus chain OB [auth D] Focus chain R [auth A] Focus chain S [auth A] Focus chain T [auth A] Focus chain TA [auth C] Focus chain U [auth A] Focus chain UA [auth C] Focus chain V [auth A] Focus chain VA [auth C] Focus chain W [auth A] Focus chain WA [auth C] Focus chain X [auth A] Focus chain XA [auth C] Focus chain Y [auth A] Focus chain YA [auth C] Focus chain ZA [auth C]
POV (Subject of Investigation/LOI) Query on POV Download Ideal Coordinates CCD File SDF format, chain AA [auth B] SDF format, chain BA [auth B] SDF format, chain CA [auth B] SDF format, chain CB [auth D] SDF format, chain DA [auth B] SDF format, chain DB [auth D] SDF format, chain EA [auth B] SDF format, chain EB [auth D] SDF format, chain FB [auth D] SDF format, chain GB [auth D] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth A] SDF format, chain OA [auth C] SDF format, chain P [auth A] SDF format, chain PA [auth C] SDF format, chain Q [auth A] SDF format, chain QA [auth C] SDF format, chain RA [auth C] SDF format, chain SA [auth C] MOL2 format, chain AA [auth B] MOL2 format, chain BA [auth B] MOL2 format, chain CA [auth B] MOL2 format, chain CB [auth D] MOL2 format, chain DA [auth B] MOL2 format, chain DB [auth D] MOL2 format, chain EA [auth B] MOL2 format, chain EB [auth D] MOL2 format, chain FB [auth D] MOL2 format, chain GB [auth D] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth A] MOL2 format, chain OA [auth C] MOL2 format, chain P [auth A] MOL2 format, chain PA [auth C] MOL2 format, chain Q [auth A] MOL2 format, chain QA [auth C] MOL2 format, chain RA [auth C] MOL2 format, chain SA [auth C] mmCIF format, chain AA [auth B] mmCIF format, chain BA [auth B] mmCIF format, chain CA [auth B] mmCIF format, chain CB [auth D] mmCIF format, chain DA [auth B] mmCIF format, chain DB [auth D] mmCIF format, chain EA [auth B] mmCIF format, chain EB [auth D] mmCIF format, chain FB [auth D] mmCIF format, chain GB [auth D] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain K [auth A] mmCIF format, chain OA [auth C] mmCIF format, chain P [auth A] mmCIF format, chain PA [auth C] mmCIF format, chain Q [auth A] mmCIF format, chain QA [auth C] mmCIF format, chain RA [auth C] mmCIF format, chain SA [auth C]	AA [auth B] BA [auth B] CA [auth B] CB [auth D] DA [auth B] AA [auth B], BA [auth B], CA [auth B], CB [auth D], DA [auth B], DB [auth D], EA [auth B], EB [auth D], FB [auth D], GB [auth D], I [auth A], J [auth A], K [auth A], OA [auth C], P [auth A], PA [auth C], Q [auth A], QA [auth C], RA [auth C], SA [auth C]	(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate C₄₂ H₈₂ N O₈ P WTJKGGKOPKCXLL-PFDVCBLKSA-N		Interactions Focus chain AA [auth B] Focus chain BA [auth B] Focus chain CA [auth B] Focus chain CB [auth D] Focus chain DA [auth B] Focus chain DB [auth D] Focus chain EA [auth B] Focus chain EB [auth D] Focus chain FB [auth D] Focus chain GB [auth D] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain OA [auth C] Focus chain P [auth A] Focus chain PA [auth C] Focus chain Q [auth A] Focus chain QA [auth C] Focus chain RA [auth C] Focus chain SA [auth C] Interactions & Density Focus chain AA [auth B] Focus chain BA [auth B] Focus chain CA [auth B] Focus chain CB [auth D] Focus chain DA [auth B] Focus chain DB [auth D] Focus chain EA [auth B] Focus chain EB [auth D] Focus chain FB [auth D] Focus chain GB [auth D] Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth A] Focus chain OA [auth C] Focus chain P [auth A] Focus chain PA [auth C] Focus chain Q [auth A] Focus chain QA [auth C] Focus chain RA [auth C] Focus chain SA [auth C]
CLR (Subject of Investigation/LOI) Query on CLR Download Ideal Coordinates CCD File SDF format, chain BB [auth C] SDF format, chain NA [auth B] SDF format, chain PB [auth D] SDF format, chain Z [auth A] MOL2 format, chain BB [auth C] MOL2 format, chain NA [auth B] MOL2 format, chain PB [auth D] MOL2 format, chain Z [auth A] mmCIF format, chain BB [auth C] mmCIF format, chain NA [auth B] mmCIF format, chain PB [auth D] mmCIF format, chain Z [auth A]	BB [auth C], NA [auth B], PB [auth D], Z [auth A]	CHOLESTEROL C₂₇ H₄₆ O HVYWMOMLDIMFJA-DPAQBDIFSA-N		Interactions Focus chain BB [auth C] Focus chain NA [auth B] Focus chain PB [auth D] Focus chain Z [auth A] Interactions & Density Focus chain BB [auth C] Focus chain NA [auth B] Focus chain PB [auth D] Focus chain Z [auth A]
NAG (Subject of Investigation/LOI) Query on NAG Download Ideal Coordinates CCD File SDF format, chain QB [auth E] SDF format, chain RB [auth F] SDF format, chain SB [auth G] SDF format, chain TB [auth H] MOL2 format, chain QB [auth E] MOL2 format, chain RB [auth F] MOL2 format, chain SB [auth G] MOL2 format, chain TB [auth H] mmCIF format, chain QB [auth E] mmCIF format, chain RB [auth F] mmCIF format, chain SB [auth G] mmCIF format, chain TB [auth H]	QB [auth E], RB [auth F], SB [auth G], TB [auth H]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain QB [auth E] Focus chain RB [auth F] Focus chain SB [auth G] Focus chain TB [auth H] Interactions & Density Focus chain QB [auth E] Focus chain RB [auth F] Focus chain SB [auth G] Focus chain TB [auth H]
K (Subject of Investigation/LOI) Query on K Download Ideal Coordinates CCD File SDF format, chain L [auth A] SDF format, chain M [auth A] SDF format, chain N [auth A] SDF format, chain O [auth A] MOL2 format, chain L [auth A] MOL2 format, chain M [auth A] MOL2 format, chain N [auth A] MOL2 format, chain O [auth A] mmCIF format, chain L [auth A] mmCIF format, chain M [auth A] mmCIF format, chain N [auth A] mmCIF format, chain O [auth A]	L [auth A], M [auth A], N [auth A], O [auth A]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N		Interactions Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Interactions & Density Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A]