8UXA | pdb_00008uxa

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

PDB DOI: https://doi.org/10.2210/pdb8UXA/pdb
NAKB: 8UXA
EM Map EMD-42720: EMDB EMDataResource

Classification: RIBOSOME
Organism(s): Saccharomyces cerevisiae
Expression System: Saccharomyces cerevisiae
Mutation(s): No

Deposited: 2023-11-09 Released: 2025-11-19
Deposition Author(s): Yu, Z., Zheng, F., Zhou, C.
Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Yu, Z., Zheng, F., Zhou, C.

To be published.

Macromolecule Content

Total Structure Weight: 3,272.09 kDa
Atom Count: 201,764
Modeled Residue Count: 17,679
Deposited Residue Count: 19,475
Unique protein chains: 72
Unique nucleic acid chains: 4

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS38	A [auth AA]	34	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: QRI5
UniProt
Find proteins for P32344 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32344 Go to UniProtKB: P32344
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UniProt Group	P32344
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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS41	B [auth AB]	101	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: FYV4
UniProt
Find proteins for P38783 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38783 Go to UniProtKB: P38783
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UniProt Group	P38783
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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS42	C [auth AC]	259	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM26
UniProt
Find proteins for P47141 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47141 Go to UniProtKB: P47141
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UniProt Group	P47141
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
37S ribosomal protein MRP1, mitochondrial	D [auth AD]	321	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP1, YDR347W, D9651.1
UniProt
Find proteins for P10662 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10662 Go to UniProtKB: P10662
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P10662
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
37S ribosomal protein MRP13, mitochondrial	E [auth AE]	339	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP13, YGR084C
UniProt
Find proteins for P12686 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P12686 Go to UniProtKB: P12686
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UniProt Group	P12686
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS45	F [auth AF]	320	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS35
UniProt
Find proteins for P53292 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53292 Go to UniProtKB: P53292
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53292
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS23	G [auth AG]	236	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM25
UniProt
Find proteins for P40496 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40496 Go to UniProtKB: P40496
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UniProt Group	P40496
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS26	H [auth AH]	234	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: PET123
UniProt
Find proteins for P17558 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P17558 Go to UniProtKB: P17558
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UniProt Group	P17558
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS29	I [auth AI]	405	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM23
UniProt
Find proteins for Q01163 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q01163 Go to UniProtKB: Q01163
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UniProt Group	Q01163
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS33	J [auth AJ]	96	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM27
UniProt
Find proteins for P53305 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53305 Go to UniProtKB: P53305
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UniProt Group	P53305
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS35	K [auth AK]	273	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM24
UniProt
Find proteins for Q03976 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q03976 Go to UniProtKB: Q03976
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q03976
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein mS37	O [auth Z]	91	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP10
UniProt
Find proteins for O75012 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore O75012 Go to UniProtKB: O75012
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UniProt Group	O75012
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
37S ribosomal protein MRP51, mitochondrial	P [auth g]	344	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP51, YPL118W
UniProt
Find proteins for Q02950 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02950 Go to UniProtKB: Q02950
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UniProt Group	Q02950
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS2m	Q [auth h]	267	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP4
UniProt
Find proteins for P32902 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32902 Go to UniProtKB: P32902
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UniProt Group	P32902
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein VAR1, mitochondrial	R [auth i]	398	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: VAR1, Q0140
UniProt
Find proteins for P02381 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P02381 Go to UniProtKB: P02381
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UniProt Group	P02381
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
37S ribosomal protein NAM9, mitochondrial	S [auth j]	486	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: NAM9, MNA6, YNL137C, N1211, N1840
UniProt
Find proteins for P27929 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P27929 Go to UniProtKB: P27929
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UniProt Group	P27929
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS5m	T [auth k]	293	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS5
UniProt
Find proteins for P33759 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P33759 Go to UniProtKB: P33759
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UniProt Group	P33759
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
37S ribosomal protein MRP17, mitochondrial	U [auth l]	131	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP17, YKL003C
UniProt
Find proteins for P28778 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P28778 Go to UniProtKB: P28778
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UniProt Group	P28778
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS7m	V [auth m]	161	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM7
UniProt
Find proteins for P47150 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47150 Go to UniProtKB: P47150
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UniProt Group	P47150
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
37S ribosomal protein S8, mitochondrial	W [auth n]	155	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS8, YMR158W, YM8520.07
UniProt
Find proteins for Q03799 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q03799 Go to UniProtKB: Q03799
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UniProt Group	Q03799
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS9m	X [auth o]	244	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS9
UniProt
Find proteins for P38120 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38120 Go to UniProtKB: P38120
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UniProt Group	P38120
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS10m	Y [auth p]	186	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM10
UniProt
Find proteins for Q03201 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q03201 Go to UniProtKB: Q03201
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UniProt Group	Q03201
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS11m	Z [auth q]	152	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS18
UniProt
Find proteins for P42847 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P42847 Go to UniProtKB: P42847
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UniProt Group	P42847
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS12m	AA [auth r]	125	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS12
UniProt
Find proteins for P53732 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53732 Go to UniProtKB: P53732
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UniProt Group	P53732
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS13m	BA [auth s]	120	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: SWS2
UniProt
Find proteins for P53937 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53937 Go to UniProtKB: P53937
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UniProt Group	P53937
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
37S ribosomal protein MRP2, mitochondrial	CA [auth t]	115	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP2, YPR166C, P9325.7
UniProt
Find proteins for P10663 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P10663 Go to UniProtKB: P10663
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UniProt Group	P10663
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS15m	DA [auth u]	253	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS28
UniProt
Find proteins for P21771 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P21771 Go to UniProtKB: P21771
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UniProt Group	P21771
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein bS16m	EA [auth v]	120	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS16
UniProt
Find proteins for Q02608 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02608 Go to UniProtKB: Q02608
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UniProt Group	Q02608
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
37S ribosomal protein S17, mitochondrial	FA [auth w]	237	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPS17, YMR188C, YM8010.18C
UniProt
Find proteins for Q03246 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q03246 Go to UniProtKB: Q03246
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UniProt Group	Q03246
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein bS18m	GA [auth x]	99	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM18
UniProt
Find proteins for P40033 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40033 Go to UniProtKB: P40033
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UniProt Group	P40033
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS19m	HA [auth y]	80	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RSM19
UniProt
Find proteins for P53733 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53733 Go to UniProtKB: P53733
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UniProt Group	P53733
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein bS21m	IA [auth z]	92	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP21
UniProt
Find proteins for P38175 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38175 Go to UniProtKB: P38175
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UniProt Group	P38175
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL36m	JA [auth 0]	38	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RTC6
UniProt
Find proteins for O14464 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore O14464 Go to UniProtKB: O14464
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UniProt Group	O14464
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL38	KA [auth 1]	348	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL35
UniProt
Find proteins for Q06678 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06678 Go to UniProtKB: Q06678
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UniProt Group	Q06678
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL40	LA [auth 2]	113	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL28
UniProt
Find proteins for P36527 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36527 Go to UniProtKB: P36527
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UniProt Group	P36527
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL41	MA [auth 3]	130	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL27
UniProt
Find proteins for P36526 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36526 Go to UniProtKB: P36526
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UniProt Group	P36526
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL43	NA [auth 4]	138	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL51
UniProt
Find proteins for Q06090 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06090 Go to UniProtKB: Q06090
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UniProt Group	Q06090
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL44	OA [auth 5]	324	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL3
UniProt
Find proteins for P36516 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36516 Go to UniProtKB: P36516
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UniProt Group	P36516
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL46	PA [auth 6]	281	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL17
UniProt
Find proteins for P36528 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36528 Go to UniProtKB: P36528
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UniProt Group	P36528
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL49	QA [auth 7]	106	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: IMG2
UniProt
Find proteins for P25642 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25642 Go to UniProtKB: P25642
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UniProt Group	P25642
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL50	RA [auth 8]	264	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL13
UniProt
Find proteins for Q02204 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q02204 Go to UniProtKB: Q02204
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UniProt Group	Q02204
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL57	SA [auth 9]	215	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL15
UniProt
Find proteins for P36523 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36523 Go to UniProtKB: P36523
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UniProt Group	P36523
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL2m	UA [auth B]	393	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: RML2
UniProt
Find proteins for P32611 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32611 Go to UniProtKB: P32611
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UniProt Group	P32611
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL3m	VA [auth C]	249	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL9
UniProt
Find proteins for P31334 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P31334 Go to UniProtKB: P31334
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UniProt Group	P31334
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL4m	WA [auth D]	252	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: YML6
UniProt
Find proteins for P51998 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P51998 Go to UniProtKB: P51998
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UniProt Group	P51998
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL5m	XA [auth E]	274	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL7
UniProt
Find proteins for P36519 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36519 Go to UniProtKB: P36519
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UniProt Group	P36519
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL6m	YA [auth F]	196	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL6
UniProt
Find proteins for P32904 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32904 Go to UniProtKB: P32904
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UniProt Group	P32904
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL9m	ZA [auth G]	74	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL50
UniProt
Find proteins for P53724 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53724 Go to UniProtKB: P53724
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53724
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL13m	AB [auth H]	160	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL23
UniProt
Find proteins for Q12487 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12487 Go to UniProtKB: Q12487
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q12487
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL14m	BB [auth I]	138	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL38
UniProt
Find proteins for P35996 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35996 Go to UniProtKB: P35996
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P35996
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL15m	CB [auth J]	220	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL10
UniProt
Find proteins for P36520 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36520 Go to UniProtKB: P36520
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36520
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL16m	DB [auth K]	195	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL16
UniProt
Find proteins for P38064 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38064 Go to UniProtKB: P38064
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P38064
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL17m	EB [auth L]	237	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL8
UniProt
Find proteins for P22353 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P22353 Go to UniProtKB: P22353
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P22353
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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL19m	FB [auth M]	151	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: IMG1
UniProt
Find proteins for P25626 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25626 Go to UniProtKB: P25626
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P25626
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Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL21m	GB [auth N]	118	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL49
UniProt
Find proteins for P40858 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40858 Go to UniProtKB: P40858
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P40858
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Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL22m	HB [auth O]	225	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL22
UniProt
Find proteins for P53881 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53881 Go to UniProtKB: P53881
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53881
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Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL23m	IB [auth P]	207	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP20
UniProt
Find proteins for P32387 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P32387 Go to UniProtKB: P32387
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P32387
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Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL24m	JB [auth Q]	296	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL40
UniProt
Find proteins for P36534 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36534 Go to UniProtKB: P36534
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36534
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Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL27m	KB [auth R]	337	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRP7
UniProt
Find proteins for P12687 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P12687 Go to UniProtKB: P12687
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P12687
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Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL28m	LB [auth S]	216	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL24
UniProt
Find proteins for P36525 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36525 Go to UniProtKB: P36525
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36525
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Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL29m	MB [auth T]	225	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL4
UniProt
Find proteins for P36517 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36517 Go to UniProtKB: P36517
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36517
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Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL30m	NB [auth U]	82	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL33
UniProt
Find proteins for P20084 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P20084 Go to UniProtKB: P20084
Entity Groups
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UniProt Group	P20084
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Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL31m	OB [auth V]	177	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL36
UniProt
Find proteins for P36531 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36531 Go to UniProtKB: P36531
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36531
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Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL32m	PB [auth W]	112	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL32
UniProt
Find proteins for P25348 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P25348 Go to UniProtKB: P25348
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P25348
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Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL33m	QB [auth X]	64	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL39
UniProt
Find proteins for P36533 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36533 Go to UniProtKB: P36533
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36533
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Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein bL34m	RB [auth Y]	46	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: YDR115W
UniProt
Find proteins for Q04598 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04598 Go to UniProtKB: Q04598
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UniProt Group	Q04598
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Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL58	SB [auth a]	177	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL20
UniProt
Find proteins for P22354 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P22354 Go to UniProtKB: P22354
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P22354
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Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL59	TB [auth b]	155	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL25
UniProt
Find proteins for P23369 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P23369 Go to UniProtKB: P23369
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P23369
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Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL60	UB [auth c]	119	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL31
UniProt
Find proteins for P14063 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14063 Go to UniProtKB: P14063
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14063
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Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein mL67	VB [auth d]	215	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MHR1
UniProt
Find proteins for Q06630 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q06630 Go to UniProtKB: Q06630
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Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q06630
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Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL10m	WB [auth e]	249	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL11
UniProt
Find proteins for P36521 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P36521 Go to UniProtKB: P36521
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P36521
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Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL11m	XB [auth f]	158	Saccharomyces cerevisiae	Mutation(s): 0 Gene Names: MRPL19
UniProt
Find proteins for P53875 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53875 Go to UniProtKB: P53875
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P53875
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Molecule	Chains	Length	Organism
Entity ID: 12
Small ribosomal subunit rRNA	L [auth AL]	1,649	Saccharomyces cerevisiae
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Molecule	Chains	Length	Organism
Entity ID: 13
Small ribosomal subunit tRNA	M [auth AM]	76	Saccharomyces cerevisiae
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Molecule	Chains	Length	Organism
Entity ID: 14
mRNA	N [auth AN]	13	Saccharomyces cerevisiae
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Molecule	Chains	Length	Organism
Entity ID: 46
Large ribosomal subunit rRNA	TA [auth A]	3,296	Saccharomyces cerevisiae
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Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-11-19

Deposition Author(s):

Yu, Z.

Zheng, F.

Zhou, C.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)	United States	--

Revision History (Full details and data files)

Version 1.0: 2025-11-19
Type: Initial release

RCSB PDB is hosted by

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8UXA | pdb_00008uxa

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Literature

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt

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