8ULH | pdb_00008ulh

Fab of RSV neutralizing antibody 1G12

PDB DOI: https://doi.org/10.2210/pdb8ULH/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-10-16 Released: 2024-11-06
Deposition Author(s): Harshbarger, W.D., Andreano, E., Malito, E.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free:
0.228 (Depositor), 0.229 (DCC)
R-Value Work:
0.194 (Depositor), 0.194 (DCC)
R-Value Observed:
0.195 (Depositor)

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural and functional properties of monoclonal and vaccine-induced antibodies targeting epitopes of emerging RSV variants

Xian, Y., Andreano, E., Tian, S., Phung, E., Garbinski, L., Biancucci, M., Lofano, G., Mallett, C.P., Balsaraf, A., Huang, Y., Buricchi, F., Finco, O., Rappuoli, R., Bottomley, M.J., Chandramouli, S., Warter, L., Williams, J., Malito, E., Harshbarger, W.D.

To be published.

Macromolecule Content

Total Structure Weight: 50.66 kDa
Atom Count: 3,946
Modeled Residue Count: 428
Deposited Residue Count: 471
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1G12 Fab heavy chain	A [auth H]	257	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
1G12 Fab light chain	B [auth L]	214	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free: 0.228 (Depositor), 0.229 (DCC)
R-Value Work: 0.194 (Depositor), 0.194 (DCC)
R-Value Observed: 0.195 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.456	α = 90
b = 82.563	β = 90
c = 112.234	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data reduction
PHENIX	refinement
HKL-3000	data scaling
PHENIX	phasing
PHENIX	refinement
SERGUI	data collection

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-06

Deposition Author(s):

Harshbarger, W.D.

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-11-06
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.