Download MendeleyMolecular basis of human trace amine-associated receptor 1 activation
Zilberg, G., Parpounas, A.K., Warren, A.L., Yang, S., Wacker, D.(2024) Nat Commun 15: 108
8UHB
Cryo-EM Structure of the Ro5256390-bound hTA1-Gs heterotrimer signaling complex
- PDB DOI: https://doi.org/10.2210/pdb8UHB/pdb
- EM Map EMD-42268: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Homo sapiens, Rattus norvegicus, Lama glama
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes
- Membrane Protein: Yes PDBTMMemProtMD
- Deposited: 2023-10-08 Released: 2024-01-10
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute of Mental Health (NIH/NIMH), National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.35 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Soluble cytochrome b562,Beta-2 adrenergic receptor,Trace amine-associated receptor 1 | 524 | Homo sapiens | Mutation(s): 4 Gene Names: cybC, ADRB2, TAAR1 Membrane Entity: Yes |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0ABE7 (Escherichia coli) Explore P0ABE7 Go to UniProtKB: P0ABE7 | |||||
Find proteins for P07550 (Homo sapiens) Explore P07550 Go to UniProtKB: P07550 | |||||
PHAROS: P07550 GTEx: ENSG00000169252 | |||||
Find proteins for Q96RJ0 (Homo sapiens) Explore Q96RJ0 Go to UniProtKB: Q96RJ0 | |||||
PHAROS: Q96RJ0 GTEx: ENSG00000146399 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Groups | P0ABE7P07550Q96RJ0 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | 358 | Homo sapiens | Mutation(s): 0 Gene Names: GNB1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62873 (Homo sapiens) Explore P62873 Go to UniProtKB: P62873 | |||||
PHAROS: P62873 GTEx: ENSG00000078369 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P62873 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | 394 | Rattus norvegicus | Mutation(s): 11 Gene Names: Gnas Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P63095 (Rattus norvegicus) Explore P63095 Go to UniProtKB: P63095 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P63095 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | D [auth G] | 71 | Homo sapiens | Mutation(s): 0 Gene Names: GNG2 Membrane Entity: Yes |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P59768 (Homo sapiens) Explore P59768 Go to UniProtKB: P59768 | |||||
PHAROS: P59768 GTEx: ENSG00000186469 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P59768 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nanobody 35 | E [auth N] | 134 | Lama glama | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| WV8 (Subject of Investigation/LOI) Query on WV8 | F [auth A] | (2R,4S)-4-[(2S)-2-phenylbutyl]-1,3-oxazolidin-2-amine C13 H18 N2 O IXDKFUBXESWHSL-JQWIXIFHSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.35 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
Entry History & Funding Information
Deposition Data
- Released Date: 2024-01-10 Deposition Author(s): Zilberg, G., Warren, A.L., Parpounas, A.K., Wacker, D.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM133504 |
| National Institutes of Health/National Institute of Mental Health (NIH/NIMH) | United States | MH132317 |
| National Institutes of Health/National Institute on Drug Abuse (NIH/NIDA) | United States | DA053558 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM062754 |
Revision History (Full details and data files)
- Version 1.0: 2024-01-10
Type: Initial release
