8U0B | pdb_00008u0b

Crystal structure of Lyssavirus rabies (Nishigahara strain) nucleoprotein in complex with phosphomimetic phosphoprotein S48E

• PDB DOI: https://doi.org/10.2210/pdb8U0B/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Lyssavirus rabies
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-08-28 Released: 2025-04-23 
• Deposition Author(s): Donnelly, C.M., Stewart, M., Forwood, J.K.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.215 (Depositor), 0.214 (DCC) 
• R-Value Work: 
  0.183 (Depositor), 0.184 (DCC) 
• R-Value Observed: 
  0.184 (Depositor) 

Starting Model: experimental

Literature

The Replication Function of Rabies Virus P Protein Is Regulated by a Novel Phosphorylation Site in the N-Terminal N Protein-Binding Region

Tudhope, E., Donnelly, C.M., Sethi, A., David, C., Williamson, N., Stewart, M., Forwood, J.K., Gooley, P.R., Moseley, G.W.

(2025) Viruses 17

• DOI: https://doi.org/10.3390/v17081075

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 58.56 kDa 
• Atom Count: 3,723 
• Modeled Residue Count: 425 
• Deposited Residue Count: 517 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Phosphoprotein,Nucleoprotein chimera	A	517	Lyssavirus rabies	Mutation(s): 0
UniProt
Find proteins for B9VMI2 (Lyssavirus rabies) Explore B9VMI2  Go to UniProtKB:  B9VMI2
Find proteins for Q5NU29 (Lyssavirus rabies) Explore Q5NU29  Go to UniProtKB:  Q5NU29
UniProt Groups	Q5NU29B9VMI2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.215 (Depositor), 0.214 (DCC) 
• R-Value Work:  0.183 (Depositor), 0.184 (DCC) 
• R-Value Observed: 0.184 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.894	α = 90
b = 75.393	β = 90
c = 154.985	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing
Coot	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2025-04-23 
Deposition Author(s): Donnelly, C.M., Stewart, M., Forwood, J.K.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2025-04-23
  Type: Initial release
  
• Version 1.1: 2025-08-20
  Changes: Database references