8TVL | pdb_00008tvl

Plasminogen binding group A streptococcus M-like protein from AP53 bound to human plasminogen

• PDB DOI: https://doi.org/10.2210/pdb8TVL/pdb
• EM Map EMD-42429: EMDB EMDataResource

• Classification: BLOOD CLOTTING
• Organism(s): Streptococcus pyogenes
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2023-08-18 Released: 2023-10-11 
• Deposition Author(s): Readnour, B.M., Tjia-Fleck, S.K., Castellino, F.J., McCann, N.R.
• Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental

Literature

Plasminogen binding group A streptococcus M-like protein from AP53 bound to human plasminogen

Readnour, B.M., Tjia-Fleck, S.K., McCann, N.R., Ayinuola, Y.A., Ploplis, V.A., Castellino, F.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 40.66 kDa 
• Atom Count: 2,706 
• Modeled Residue Count: 338 
• Deposited Residue Count: 356 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Plasminogen-binding group A streptococcal M-like protein PAM	A	356	Streptococcus pyogenes	Mutation(s): 0  Gene Names: pam, emm
UniProt
Find proteins for P49054 (Streptococcus pyogenes) Explore P49054  Go to UniProtKB:  P49054

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.21rc1_5054

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-10-11 
Deposition Author(s): Readnour, B.M., Tjia-Fleck, S.K., Castellino, F.J., McCann, N.R.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)	United States	HL013424

Revision History  

• Version 1.0: 2023-10-11
  Type: Initial release
  
• Version 1.1: 2023-12-13
  Changes: Data collection, Database references
• Version 2.0: 2024-08-21
  Type: Coordinate replacement
  Reason: Model orientation/position
  Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Experimental preparation, Refinement description, Source and taxonomy, Structure summary