8TVL

Plasminogen binding group A streptococcus M-like protein from AP53 bound to human plasminogen

PDB DOI: https://doi.org/10.2210/pdb8TVL/pdb
EM Map EMD-42429: EMDB EMDataResource

Classification: BLOOD CLOTTING
Organism(s): Streptococcus pyogenes
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-08-18 Released: 2023-10-11
Deposition Author(s): Readnour, B.M., Tjia-Fleck, S.K., Castellino, F.J., McCann, N.R.
Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Plasminogen binding group A streptococcus M-like protein from AP53 bound to human plasminogen

Readnour, B.M., Tjia-Fleck, S.K., McCann, N.R., Ayinuola, Y.A., Ploplis, V.A., Castellino, F.J.

To be published.

Macromolecule Content

Total Structure Weight: 40.66 kDa
Atom Count: 2,706
Modelled Residue Count: 338
Deposited Residue Count: 356
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
M protein (Fragment)	A	356	Streptococcus pyogenes	Mutation(s): 0
UniProt
Find proteins for P49054 (Streptococcus pyogenes) Explore P49054 Go to UniProtKB: P49054
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P49054
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC
MODEL REFINEMENT	PHENIX	15.07

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-10-11

Deposition Author(s):

Tjia-Fleck, S.K.

Castellino, F.J.

Funding Organization	Location	Grant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)	United States	HL013424

Revision History (Full details and data files)

Version 1.0: 2023-10-11
Type: Initial release
Version 1.1: 2023-12-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.