Download MendeleyFab 221-5 in complex with OspA
Rudolph, M.J., Mantis, N.To be published.
8TV3 | pdb_00008tv3
Fab 221-5 in complex with OspA
- PDB DOI: https://doi.org/10.2210/pdb8TV3/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens, Borreliella burgdorferi B31
- Expression System: Cricetulus griseus, Escherichia coli B
- Mutation(s): No
- Deposited: 2023-08-17 Released: 2024-08-28
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.31 Å
- R-Value Free: 0.227 (Depositor), 0.230 (DCC)
- R-Value Work: 0.199 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.201 (Depositor)
Starting Models: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Light chain of human monoclonal Fab 22105 | A [auth L] | 213 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Heavy chain of human monoclonal Fab 221-5 | B [auth H] | 228 | Homo sapiens | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer surface protein A | C [auth A] | 256 | Borreliella burgdorferi B31 | Mutation(s): 0 Gene Names: ospA |  |
UniProt | |||||
Find proteins for P0CL66 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore P0CL66 Go to UniProtKB: P0CL66 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0CL66 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2PE Query on 2PE | D [auth L] | NONAETHYLENE GLYCOL C18 H38 O10 YZUUTMGDONTGTN-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | E [auth L] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | F [auth L], G [auth L], H, I [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.31 Å
- R-Value Free: 0.227 (Depositor), 0.230 (DCC)
- R-Value Work: 0.199 (Depositor), 0.200 (DCC)
- R-Value Observed: 0.201 (Depositor)
Space Group: P 21 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 63.819 | α = 90 |
| b = 90.963 | β = 90 |
| c = 211.962 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-08-28 Deposition Author(s): Rudolph, M.J., Mantis, N.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | 75N93019C00040 |
Revision History (Full details and data files)
- Version 1.0: 2024-08-28
Type: Initial release - Version 1.1: 2024-10-09
Changes: Structure summary
