8TS6 | pdb_00008ts6

Cyanophage A-1(L) portal


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8TS6

This is version 1.0 of the entry. See complete history

Literature

Structure of the intact tail machine of Anabaena myophage A-1(L).

Yu, R.C.Yang, F.Zhang, H.Y.Hou, P.Du, K.Zhu, J.Cui, N.Xu, X.Chen, Y.Li, Q.Zhou, C.Z.

(2024) Nat Commun 15: 2654-2654

  • DOI: https://doi.org/10.1038/s41467-024-47006-z
  • Primary Citation Related Structures: 
    8KE9, 8KEA, 8KEC, 8KEE, 8KEF, 8KEG, 8TS6

  • PubMed Abstract: 

    The Myoviridae cyanophage A-1(L) specifically infects the model cyanobacteria Anabaena sp. PCC 7120. Following our recent report on the capsid structure of A-1(L), here we present the high-resolution cryo-EM structure of its intact tail machine including the neck, tail and attached fibers. Besides the dodecameric portal, the neck contains a canonical hexamer connected to a unique pentadecamer that anchors five extended bead-chain-like neck fibers. The 1045-Å-long contractile tail is composed of a helical bundle of tape measure proteins surrounded by a layer of tube proteins and a layer of sheath proteins, ended with a five-component baseplate. The six long and six short tail fibers are folded back pairwise, each with one end anchoring to the baseplate and the distal end pointing to the capsid. Structural analysis combined with biochemical assays further enable us to identify the dual hydrolytic activities of the baseplate hub, in addition to two host receptor binding domains in the tail fibers. Moreover, the structure of the intact A-1(L) also helps us to reannotate its genome. These findings will facilitate the application of A-1(L) as a chassis cyanophage in synthetic biology.


  • Organizational Affiliation
    • School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China.

Macromolecule Content 

  • Total Structure Weight: 729.69 kDa 
  • Atom Count: 48,444 
  • Modeled Residue Count: 6,000 
  • Deposited Residue Count: 6,408 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Portal protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
534uncultured cyanophageMutation(s): 0 
UniProt
Find proteins for A0ACD6B8V6 (Nostoc phage A1)
Explore A0ACD6B8V6 
Go to UniProtKB:  A0ACD6B8V6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0ACD6B8V6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2018YFA0903100

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-10
    Type: Initial release