8TLD | pdb_00008tld

Structure of the IL-5 Signaling Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of the interleukin-5 receptor complex exemplifies the organizing principle of common beta cytokine signaling.

Caveney, N.A.Rodriguez, G.E.Pollmann, C.Meyer, T.Borowska, M.T.Wilson, S.C.Wang, N.Xiang, X.Householder, K.D.Tao, P.Su, L.L.Saxton, R.A.Piehler, J.Garcia, K.C.

(2024) Mol Cell 84: 1995-2005.e7

  • DOI: https://doi.org/10.1016/j.molcel.2024.03.023
  • Primary Citation of Related Structures:  
    8TLD

  • PubMed Abstract: 

    Cytokines regulate immune responses by binding to cell surface receptors, including the common subunit beta (βc), which mediates signaling for GM-CSF, IL-3, and IL-5. Despite known roles in inflammation, the structural basis of IL-5 receptor activation remains unclear. We present the cryo-EM structure of the human IL-5 ternary receptor complex, revealing architectural principles for IL-5, GM-CSF, and IL-3. In mammalian cell culture, single-molecule imaging confirms hexameric IL-5 complex formation on cell surfaces. Engineered chimeric receptors show that IL-5 signaling, as well as IL-3 and GM-CSF, can occur through receptor heterodimerization, obviating the need for higher-order assemblies of βc dimers. These findings provide insights into IL-5 and βc receptor family signaling mechanisms, aiding in the development of therapies for diseases involving deranged βc signaling.


  • Organizational Affiliation
    • Departments of Molecular and Cellular Physiology and Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA; Centre for Blood Research, University of British Columbia, Vancouver, BC, Canada. Electronic address: nathanael.caveney@ubc.ca.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytokine receptor common subunit betaA [auth B],
D [auth E]
717Homo sapiensMutation(s): 0 
Gene Names: CSF2RBIL3RBIL5RB
UniProt & NIH Common Fund Data Resources
Find proteins for P32927 (Homo sapiens)
Explore P32927 
Go to UniProtKB:  P32927
PHAROS:  P32927
GTEx:  ENSG00000100368 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32927
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-5B [auth C],
C [auth D]
146Homo sapiensMutation(s): 0 
Gene Names: IL5
UniProt & NIH Common Fund Data Resources
Find proteins for P05113 (Homo sapiens)
Explore P05113 
Go to UniProtKB:  P05113
PHAROS:  P05113
GTEx:  ENSG00000113525 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05113
Glycosylation
Glycosylation Sites: 1Go to GlyGen: P05113-1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-5 receptor subunit alphaE [auth F]392Homo sapiensMutation(s): 0 
Gene Names: IL5RA
UniProt & NIH Common Fund Data Resources
Find proteins for Q01344 (Homo sapiens)
Explore Q01344 
Go to UniProtKB:  Q01344
PHAROS:  Q01344
GTEx:  ENSG00000091181 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ01344
Glycosylation
Glycosylation Sites: 4Go to GlyGen: Q01344-1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC4

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-10
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Structure summary
  • Version 1.2: 2024-12-11
    Changes: Data collection, Database references
  • Version 1.3: 2025-05-28
    Changes: Data collection