8TID

Combined linker domain of N-DRC and associated proteins Tetrahymena


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.

Ghanaeian, A.Majhi, S.McCafferty, C.L.Nami, B.Black, C.S.Yang, S.K.Legal, T.Papoulas, O.Janowska, M.Valente-Paterno, M.Marcotte, E.M.Wloga, D.Bui, K.H.

(2023) Nat Commun 14: 5741-5741

  • DOI: https://doi.org/10.1038/s41467-023-41480-7
  • Primary Citation of Related Structures:  
    8TEK, 8TH8, 8TID

  • PubMed Abstract: 

    Cilia are hairlike protrusions that project from the surface of eukaryotic cells and play key roles in cell signaling and motility. Ciliary motility is regulated by the conserved nexin-dynein regulatory complex (N-DRC), which links adjacent doublet microtubules and regulates and coordinates the activity of outer doublet complexes. Despite its critical role in cilia motility, the assembly and molecular basis of the regulatory mechanism are poorly understood. Here, using cryo-electron microscopy in conjunction with biochemical cross-linking and integrative modeling, we localize 12 DRC subunits in the N-DRC structure of Tetrahymena thermophila. We also find that the CCDC96/113 complex is in close contact with the DRC9/10 in the linker region. In addition, we reveal that the N-DRC is associated with a network of coiled-coil proteins that most likely mediates N-DRC regulatory activity.


  • Organizational Affiliation

    Department of Anatomy and Cell Biology, Faculty of Medicine and Health Sciences, McGill University, Québec, Canada.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex protein 1/2 N-terminal domain-containing protein826Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil protein, putative506Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
LRRC48 protein575Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Growth-arrest-specific microtubule-binding protein472Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Growth-arrest-specific microtubule-binding protein468Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar associated protein461Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Kinase domain protein345Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil lobo-like protein, putative852Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand calcium-binding domain proteinI,
Z [auth i]
185Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex protein 9372Tetrahymena thermophilaMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Dynein regulatory complex protein 10434Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
AAA family ATPase CDC48 subfamily protein862Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 91644Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Flagella associated proteinAA [auth n],
N
963Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil protein, putativeBA [auth o],
O
893Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
DUF4201 domain-containing protein794Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Calmodulin 7-2
Q, R
202Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil domain-containing protein 153CA [auth s],
S
187Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar associated protein361Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for Q22KK0 (Tetrahymena thermophila (strain SB210))
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
L-shape (Unknown-protein)
U, V
597Tetrahymena thermophilaMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
WD40 domain protein1,308Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
EF hand proteinX [auth Z]1,079Tetrahymena thermophilaMutation(s): 0 
UniProt
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
CFAP20Y [auth g]195Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for Q22NU3 (Tetrahymena thermophila (strain SB210))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
WD40 domain proteinDA [auth w]1,293Tetrahymena thermophilaMutation(s): 0 
UniProt
Find proteins for Q234G8 (Tetrahymena thermophila (strain SB210))
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)Canada--
Natural Sciences and Engineering Research Council (NSERC, Canada)Canada--

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-27
    Type: Initial release
  • Version 1.1: 2024-04-03
    Changes: Database references