8T9L

Pom34-Pom152 membrane attachment site yeast NPC


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.0 of the entry. See complete history


Literature

Implications of a multiscale structure of the yeast nuclear pore complex.

Akey, C.W.Echeverria, I.Ouch, C.Nudelman, I.Shi, Y.Wang, J.Chait, B.T.Sali, A.Fernandez-Martinez, J.Rout, M.P.

(2023) Mol Cell 83: 3283-3302.e5

  • DOI: https://doi.org/10.1016/j.molcel.2023.08.025
  • Primary Citation of Related Structures:  
    8T9L, 8TIE, 8TJ5

  • PubMed Abstract: 

    Nuclear pore complexes (NPCs) direct the nucleocytoplasmic transport of macromolecules. Here, we provide a composite multiscale structure of the yeast NPC, based on improved 3D density maps from cryogenic electron microscopy and AlphaFold2 models. Key features of the inner and outer rings were integrated into a comprehensive model. We resolved flexible connectors that tie together the core scaffold, along with equatorial transmembrane complexes and a lumenal ring that anchor this channel within the pore membrane. The organization of the nuclear double outer ring reveals an architecture that may be shared with ancestral NPCs. Additional connections between the core scaffold and the central transporter suggest that under certain conditions, a degree of local organization is present at the periphery of the transport machinery. These connectors may couple conformational changes in the scaffold to the central transporter to modulate transport. Collectively, this analysis provides insights into assembly, transport, and NPC evolution.


  • Organizational Affiliation

    Department of Pharmacology, Physiology and Biophysics, Boston University, Chobanian and Avedisian School of Medicine, 700 Albany Street, Boston, MA 02118, USA. Electronic address: cakey@bu.edu.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoporin POM152A [auth B],
C [auth D]
1,337Saccharomyces cerevisiaeMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P39685 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P39685 
Go to UniProtKB:  P39685
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39685
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoporin POM34B [auth A],
D [auth C]
299Saccharomyces cerevisiaeMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q12445 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12445 
Go to UniProtKB:  Q12445
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12445
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0.7

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesNIH R01 GM45377
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesNIH P41 GM109824
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesNIH R01 GM112108
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesNIH GM117212

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-11
    Type: Initial release