8T9B

Structure of the CK variant of Fab F1 (FabC-F1) in complex with the C-terminal FN3 domain of EphA2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.20 Å
  • R-Value Free: 0.315 
  • R-Value Work: 0.296 
  • R-Value Observed: 0.297 

Starting Models: experimental, in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Engineered Antigen-binding Fragments for Enhanced Crystallization of Antibody:Antigen Complexes

Bruce, H.A.Singer, A.U.Filippova, E.Blazer, L.Adams, J.J.Enderle, L.Ben-David, M.Radley, E.Mao, D.Pau, V.Orlicky, S.Sicheri, S.Kourinov, I.Atwell, S.Kossiakoff, A.A.Sidhu, S.S.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CK variant of Fab F1 heavy chainA [auth C],
C [auth A],
E [auth D],
G [auth F]
237Homo sapiensMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
CK variant of Fab F1 light chainB [auth G],
D [auth B],
F [auth E],
H
214Homo sapiensMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Ephrin type-A receptor 2
I, J, K, L
98Homo sapiensMutation(s): 0 
Gene Names: EPHA2ECK
EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for P29317 (Homo sapiens)
Explore P29317 
Go to UniProtKB:  P29317
GTEx:  ENSG00000142627 
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UniProt GroupP29317
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.20 Å
  • R-Value Free: 0.315 
  • R-Value Work: 0.296 
  • R-Value Observed: 0.297 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.661α = 90
b = 130.65β = 89.76
c = 222.996γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other private--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release